Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28140 333 / 3e-115 unknown protein AT2G01175 79 / 7e-19 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041480 [exp] 423 / 1e-151 AT1G28140 328 / 5e-114 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G100300 [exp] 365 / 6e-128 AT1G28140 368 / 3e-129 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10063 [flax] [poplar] DUF2301 Uncharacterized integral membrane protein (DUF2301)
Representative CDS sequence Show only first row Show all	>Lus10034291 pacid=23175957 polypeptide=Lus10034291 locus=Lus10034291.g ID=Lus10034291.BGIv1.0 annot-version=v1.0 ATGGCGTTACGCATATTATCATCAACCTCGACGTCTATTTCAGCAATCACCCCTTTCCACTCGCCCCCCAAACTCTTCTTCCGGGCCTCTTCTCCATTGC GTCAAAATAAACATCAACGAAATGGAACCCTCAGCTGCAGCGCAGCCGGTAGCGACACCTCCTCCCAGACTTACAGAGGCGTTTACGGCCCTTGGACTGT CGAAGAATCCGACGTCCGCGAGGTGGTATCATACAGGGGAGGTTTAGTTACGGCAGCTTCGTCATTCGTGACAGCTGCATCGATTGCTTTCCTGCCGAAC GACTCGCCGTTGAGTGCTATAGTTGATCAAAACCTGGACTTGATCTACTTTGTAGGAGCTGGTGGTTTAGGGGTTTCTTTGTTTCTGATTCACATCTATG TGACTCCGATTAAGCGAACACTTCAAGCGTTTTGGGGACTTGGGGTAATTGGTTCAATTGCCACGTACGCAAGCCTTGCTCGGCCAGCTGGCATGGACTT GGTACACTATGTTGTTGAGAACCCTGCAGCAATCTGGCTCGTTGGCCCTCTCTTTGCTGCCCTGACTGGCCTTGTTTTCAAGGAAGGTCTATGTTATGGG AAGCTGGAAGCTGGTGTTCTGACATTTATCATACCTACACTTTTACTTGGACATCTGAGTGGTTTAATGGACGATGGAGTGAAACTAGGACTGCTAGCTT CATGGATGGCACTCTTCGTGGTGTTTGCTGGACGAAAGTTCACTCAACCCATTAAGGACGATATAGGGGATAAATCAGTGTTCATATTCAATGCGATGTC AGAAGAAGAGCAGAAATCCTTGATCCAGAAACTTGAGCAGCAGCAGCAGTAG
AA sequence Show only first row Show all	>Lus10034291 pacid=23175957 polypeptide=Lus10034291 locus=Lus10034291.g ID=Lus10034291.BGIv1.0 annot-version=v1.0 MALRILSSTSTSISAITPFHSPPKLFFRASSPLRQNKHQRNGTLSCSAAGSDTSSQTYRGVYGPWTVEESDVREVVSYRGGLVTAASSFVTAASIAFLPN DSPLSAIVDQNLDLIYFVGAGGLGVSLFLIHIYVTPIKRTLQAFWGLGVIGSIATYASLARPAGMDLVHYVVENPAAIWLVGPLFAALTGLVFKEGLCYG KLEAGVLTFIIPTLLLGHLSGLMDDGVKLGLLASWMALFVVFAGRKFTQPIKDDIGDKSVFIFNAMSEEEQKSLIQKLEQQQQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28140			unknown protein		Lus10034291 [exp]	0	1
AT4G36530			alpha/beta-Hydrolases superfam...		Lus10041763 [exp]	1.4	0.9424
AT5G42270		FTSH5, VAR1	VARIEGATED 1, FtsH extracellul...		Lus10034572 [exp]	2.6	0.9517
AT5G13720			Uncharacterised protein family...		Lus10029480 [exp]	4.5	0.9319
AT1G02800		ATCEL2	cellulase 2 (.1)		Lus10017338 [exp]	5.7	0.9376
AT1G66840		PMI2, WEB2	WEAK CHLOROPLAST MOVEMENT UNDE...		Lus10017614 [exp]	6.0	0.9250
AT5G19855		AtRbcX2	homologue of cyanobacterial Rb...		Lus10002563 [exp]	7.5	0.9252
AT5G19940			Plastid-lipid associated prote...		Lus10026221 [exp]	7.7	0.9305
AT2G37240			Thioredoxin superfamily protei...		Lus10014017 [exp]	14.1	0.9233
AT1G71500			Rieske (2Fe-2S) domain-contain...		Lus10009471 [exp]	14.1	0.9303
AT4G39970			Haloacid dehalogenase-like hyd...		Lus10000633 [exp]	14.7	0.9252

Compare expression of checked genes

Lus10034291 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.