Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25520 321 / 3e-112 Uncharacterized protein family (UPF0016) (.1) AT1G68650 313 / 4e-109 Uncharacterized protein family (UPF0016) (.1) AT5G36290 165 / 5e-50 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) AT4G13590 116 / 1e-30 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) AT1G64150 84 / 8e-19 Uncharacterized protein family (UPF0016) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035040 [exp] 371 / 6e-129 AT1G25520 339 / 4e-116 Uncharacterized protein family (UPF0016) (.1) Lus10041478 [exp] 358 / 6e-127 AT1G25520 327 / 1e-114 Uncharacterized protein family (UPF0016) (.1) Lus10026995 [exp] 168 / 3e-51 AT5G36290 401 / 5e-142 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Lus10020195 [exp] 142 / 1e-42 AT5G36290 321 / 5e-112 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Lus10011763 [exp] 121 / 2e-32 AT4G13590 429 / 6e-151 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Lus10023685 [exp] 120 / 3e-32 AT4G13590 443 / 1e-156 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Lus10021697 [exp] 98 / 1e-24 AT1G25520 94 / 5e-23 Uncharacterized protein family (UPF0016) (.1) Lus10032330 [exp] 81 / 9e-18 AT1G64150 333 / 8e-113 Uncharacterized protein family (UPF0016) (.1) Lus10024713 [exp] 54 / 2e-08 AT1G64150 322 / 5e-108 Uncharacterized protein family (UPF0016) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G117900 [exp] 342 / 8e-121 AT1G25520 344 / 2e-121 Uncharacterized protein family (UPF0016) (.1) Potri.010G128400 [exp] 342 / 9e-121 AT1G25520 335 / 1e-117 Uncharacterized protein family (UPF0016) (.1) Potri.019G116100 [exp] 342 / 2e-120 AT1G25520 344 / 2e-121 Uncharacterized protein family (UPF0016) (.1) Potri.019G053400 [exp] 164 / 4e-50 AT5G36290 328 / 4e-113 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Potri.013G086700 [exp] 164 / 8e-50 AT5G36290 322 / 8e-111 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Potri.001G053600 [exp] 121 / 9e-33 AT4G13590 417 / 5e-146 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Potri.003G174600 [exp] 114 / 3e-30 AT4G13590 369 / 2e-127 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Potri.003G134300 [exp] 97 / 1e-23 AT1G64150 344 / 6e-117 Uncharacterized protein family (UPF0016) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0292 [flax] [poplar] LysE PF01169 [flax] [poplar] UPF0016 Uncharacterized protein family UPF0016
Representative CDS sequence Show only first row Show all	>Lus10034293 pacid=23176072 polypeptide=Lus10034293 locus=Lus10034293.g ID=Lus10034293.BGIv1.0 annot-version=v1.0 ATGAGCTCAGTTACGCAGGGTTTTACCAAGTCCTTGGCGATGACTATTCTGTCCGAGATCGGCGATAAGACCTTCATCGCCGCTGCGATCTTGGCGATGC GCCATCCCAGGAGGCTAGTTTTGACAGGTTGCCTAAGTGCGTTGATCGTCATGACGATCCTTTCTGCTGTTGTTGGTTGGGCTGCTCCAAATCTGCTCTC TCGTACATGGACCCATCATATAACAACCGTATTGTTTTTTGGGTTTGGGCTTTGGTCCTTGTGGGATGGGTTTAAAGGAGACGGGGAGGCTGAGGAATTG GCTGAAGTTGAAGCAAAATTGGATGCTGACTGGAAGTCTAGTGCTGGAACAACCAAGGAAGATAGCAAGGCTGATGATGACTTAAAAAAGAAATCACGGC CATTTCTGGCTCAATTTTTCTCACCGATATTGTTAAAGGCATTCTCTATAACATTCTTTGGTGAATGGGGTGACAAGAGTCAGCTGGCTACAATTGGTTT GGCTGCTGATGAAAACCCATTTGGTGTTGTTCTTGGCGGGATTGTAGGACAAGCATTGTGCACAACTGCTGCGGTTGTAGGAGGAAAGAGCTTGGCTTCA CAGATATCTGAAAGAATGGTTGCCCTCTCAGGCGGAATTCTTTTCATTGTTTTTGGTGTCCAATCTTTCCTTTCTGGCGTCAACTGA
AA sequence Show only first row Show all	>Lus10034293 pacid=23176072 polypeptide=Lus10034293 locus=Lus10034293.g ID=Lus10034293.BGIv1.0 annot-version=v1.0 MSSVTQGFTKSLAMTILSEIGDKTFIAAAILAMRHPRRLVLTGCLSALIVMTILSAVVGWAAPNLLSRTWTHHITTVLFFGFGLWSLWDGFKGDGEAEEL AEVEAKLDADWKSSAGTTKEDSKADDDLKKKSRPFLAQFFSPILLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIVGQALCTTAAVVGGKSLAS QISERMVALSGGILFIVFGVQSFLSGVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G25520			Uncharacterized protein family...		Lus10034293 [exp]	0	1
AT3G45310			Cysteine proteinases superfami...		Lus10033428 [exp]	3.5	0.9197
AT1G04555			unknown protein		Lus10014458 [exp]	5.2	0.9223
AT1G34750			Protein phosphatase 2C family ...		Lus10033453 [exp]	6.9	0.8887
AT4G38240		GNTI, CGL1	N-ACETYLGLUCOSAMINYLTRANSFERAS...		Lus10022994 [exp]	8.9	0.8963
AT1G79230		STR1, ATRDH1, A...	ARABIDOPSIS THALIANA RHODANESE...		Lus10031177 [exp]	9.8	0.8699
AT3G45310			Cysteine proteinases superfami...		Lus10034895 [exp]	10.5	0.8995
AT5G16120			alpha/beta-Hydrolases superfam...		Lus10017601 [exp]	11.8	0.8892
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039425 [exp]	12.2	0.8895
AT5G62610	bHLH	bHLH079	basic helix-loop-helix (bHLH) ...		Lus10036659 [exp]	12.4	0.8865
AT1G18460			alpha/beta-Hydrolases superfam...		Lus10042972 [exp]	12.6	0.8948

Compare expression of checked genes

Lus10034293 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.