Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41770 1115 / 0 crooked neck protein, putative / cell cycle protein, putative (.1) AT5G45990 1008 / 0 crooked neck protein, putative / cell cycle protein, putative (.1) AT3G13210 895 / 0 crooked neck protein, putative / cell cycle protein, putative (.1) AT3G51110 583 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G28740 82 / 5e-16 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G17760 73 / 5e-13 CSTF77, ATCSTF77 ARABIDOPSIS THALIANA CLEAVAGE STIMULATION FACTOR 77, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G03430 70 / 5e-12 EMB2770, STA1 STABILIZED 1, EMBRYO DEFECTIVE 2770, pre-mRNA splicing factor-related (.1) AT3G17040 64 / 3e-10 HCF107 high chlorophyll fluorescent 107 (.1.2) AT4G24270 56 / 1e-07 EMB140 EMBRYO DEFECTIVE 140 (.1.2) AT3G11964 54 / 3e-07 RNA binding;RNA binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041477 [exp] 1340 / 0 AT5G41770 1161 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1) Lus10016906 [exp] 85 / 1e-16 AT3G17040 761 / 0.0 high chlorophyll fluorescent 107 (.1.2) Lus10018580 [exp] 78 / 1e-14 AT4G03430 1566 / 0.0 STABILIZED 1, EMBRYO DEFECTIVE 2770, pre-mRNA splicing factor-related (.1) Lus10039811 [exp] 75 / 1e-13 AT4G03430 1560 / 0.0 STABILIZED 1, EMBRYO DEFECTIVE 2770, pre-mRNA splicing factor-related (.1) Lus10022346 [exp] 74 / 2e-13 AT5G28740 905 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10041573 [exp] 70 / 4e-12 AT5G28740 1386 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10037766 [exp] 67 / 3e-11 AT3G17040 753 / 0.0 high chlorophyll fluorescent 107 (.1.2) Lus10022874 [exp] 62 / 1e-09 AT1G04080 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10024952 [exp] 59 / 1e-08 AT1G04080 879 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G094400 [exp] 1176 / 0 AT5G41770 1117 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1) Potri.003G137200 [exp] 1174 / 0 AT5G41770 1150 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1) Potri.013G135300 [exp] 82 / 8e-16 AT4G03430 1470 / 0.0 STABILIZED 1, EMBRYO DEFECTIVE 2770, pre-mRNA splicing factor-related (.1) Potri.004G035600 [exp] 79 / 7e-15 AT5G28740 1418 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G145000 [exp] 63 / 5e-10 AT3G17040 797 / 0.0 high chlorophyll fluorescent 107 (.1.2) Potri.016G062600 [exp] 56 / 9e-08 AT3G11964 2209 / 0.0 RNA binding;RNA binding (.1) Potri.003G106200 [exp] 50 / 4e-06 AT1G17760 1037 / 0.0 ARABIDOPSIS THALIANA CLEAVAGE STIMULATION FACTOR 77, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G192800 [exp] 49 / 9e-06 AT1G04080 820 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.002G257100 [exp] 44 / 0.0005 AT1G04080 874 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.004G229732 [exp] 43 / 0.0007 AT4G24270 860 / 0.0 EMBRYO DEFECTIVE 140 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF02184 [flax] [poplar] HAT HAT (Half-A-TPR) repeat
Representative CDS sequence Show only first row Show all	>Lus10034294 pacid=23175966 polypeptide=Lus10034294 locus=Lus10034294.g ID=Lus10034294.BGIv1.0 annot-version=v1.0 ATGAGTTCTTCCAAGGATGGGGATGCCTCCCTTGGCTACCTCACCAGGAAGGATACGGAGGTGAAACTCCCTCGTCCGACGAGGGTTAAGAACAAAACCC CGGCTCCCGTTCAAATCACAGCTGAGCAAATCCTTCGGGAAGCACGGGAGCGGCAGGAAGCTGAAATCCGTCCTCCAAAGCAGAAGATTACTGATACCAG TGAGCTTGCAGATTATCGTCTCCGCAAGAGGAAGGAATTTGAAGACCTAATTCGGCGTGTCAGGTGGAACATCAGCGTTTGGGTGAAGTATGCTCAATGG GAGGAATCGCAGAAGGACTTCAGCCGAGCTCGCTCGGTATGGGAGCGGGCACTTGAAGTTGATTACCGCAACCACACACTCTGGCTCAAGTATGCCGATT TCGAGATGAAGAACAAGTTCGTCAATCATGCTAGGAATGTTTGGGATCGTGCTGTTAGTCTCTTGCCTCGCATCGATCAGTTATGGTATAAGTATATTCA TATGGAAGAGATGCTTGGTAATGTTGCTGGGGCTCGACAGATATTTGAAAGGTGGATGAATTGGATGCCTGACCAGCAAGGTTGGCTGTCGTATATTAAA TTTGAGCTTCGGTATAATGAGATCGAGCGTGCCAGGGGAATATATGAAAGGTTTGTGCAGTGCCATCCGAAGGTAACGGCATGGATTCGGTTTGCTAAGT TTGAGATGAAGAATGGTGAGGTTGGTAGATGCAGGAATGTGTATGAACGTGCTGTTGAGAGATTGGCTGAGGATGAAGATGCTGAAATCTTGTTTGTGGC ATTTGCTGAGTTTGAAGAGAGATGTAAGGAGCCTGAACGCGCTCGTTGTATATACAAGTTTGCTTTGGATCATATACCCAAGGGGAGCGCAGAGGATTTG TATAGGAAGTTTGTTGCTTTTGAGAAGCAATATGGAGATAAGGAGGGCATAGAGGATGCAATAGTGAGTAAAAGAAGGTTTCAATATGAAGATGAAGTGA GGAAAAACCCAACAAGTTATGATTCTTGGTTTGATTACATTAGGTTGGAAGAAAGTGTAGGGGATAAAAATAGAGTAAGGGAGGTTTACGAACGTTCCAT TGCTAATGAGCCTCTGGATCAGGAAAAGAGATACTGGCAGAGATACATATACTTGTGGATAAACTATGCCCTTTATGAAGAGCTAGAGGCAGAAGATGTG GAGCGAACAAGGGCAGTCTACAGGTTATGCTTGCAACAGATTCCTCATGAGAAGTTCTCATTTGCTAAAATTTGGCTGTTAGCTGCCCAGTTTGAGATAC GCCAGTTAAATCTGAAGGGTGCTAGACAGATTTTAGGGAACGCAGTCGGAAAGGCCCCGAAGGATAAGATATTCAAGAAATATATTGAGATAGAGTTGCA GCTAGGAAATATGGACCGTTGCCGGAAGCTTTATGAGAAGTACCTGGAATGGTCCCCTCAAAATTGCTATGCTTGGAGTAAATATGCCGAGTTGGAGAGA TCCCTTGGTGAAACTGAGAGAGCAAGAGCAATTTTTGAGCTAGCAATTGCTCAGCCATCCTTGGACATGCCTGAGCTTCTGTGGAAGGCATACGTTGATT TTGAAATCTCTGAGGGCGAATATGAGAGAACTCGACAACTCTATGAGAGGCTGTTAGATCGAACCAAGCACTTGAAAGTATGGATTAGTTATGCAAAGTA CGAGGCCTCTGCCTTGGGGGAGGATTCTGAGGAGGGTACAGTTTCTGAAGATAAGAAGTCATTGTGCATTGCAAACGCAAGAAGTGTTTTTGAGAAGGCA CTTAACTACTTCAGAACTTCTGCTCCTGAACTGAAAGAGGAAAGGGCAATGCTTTTGGAAGAATGGCTGAACATAGAGAGTAGCTTTGGTGATCTTGGCA ATGTTGGCTTGGTCCAGCCCAAACTACCAAAGAAGTTGAAAAGAAAGCGGCCAATCAACACGGAAGATGGCCTCTCCGGGATGGAGGAGTATATTGATTA CGTCTTTCCGGAGGAGAATCACGCTCCAAACCTCAAGATATTGGAAGCGGCATACAAGTGGAAGAAGCAAAAACTGGCTTCCTCGGATGATTAG
AA sequence Show only first row Show all	>Lus10034294 pacid=23175966 polypeptide=Lus10034294 locus=Lus10034294.g ID=Lus10034294.BGIv1.0 annot-version=v1.0 MSSSKDGDASLGYLTRKDTEVKLPRPTRVKNKTPAPVQITAEQILREARERQEAEIRPPKQKITDTSELADYRLRKRKEFEDLIRRVRWNISVWVKYAQW EESQKDFSRARSVWERALEVDYRNHTLWLKYADFEMKNKFVNHARNVWDRAVSLLPRIDQLWYKYIHMEEMLGNVAGARQIFERWMNWMPDQQGWLSYIK FELRYNEIERARGIYERFVQCHPKVTAWIRFAKFEMKNGEVGRCRNVYERAVERLAEDEDAEILFVAFAEFEERCKEPERARCIYKFALDHIPKGSAEDL YRKFVAFEKQYGDKEGIEDAIVSKRRFQYEDEVRKNPTSYDSWFDYIRLEESVGDKNRVREVYERSIANEPLDQEKRYWQRYIYLWINYALYEELEAEDV ERTRAVYRLCLQQIPHEKFSFAKIWLLAAQFEIRQLNLKGARQILGNAVGKAPKDKIFKKYIEIELQLGNMDRCRKLYEKYLEWSPQNCYAWSKYAELER SLGETERARAIFELAIAQPSLDMPELLWKAYVDFEISEGEYERTRQLYERLLDRTKHLKVWISYAKYEASALGEDSEEGTVSEDKKSLCIANARSVFEKA LNYFRTSAPELKEERAMLLEEWLNIESSFGDLGNVGLVQPKLPKKLKRKRPINTEDGLSGMEEYIDYVFPEENHAPNLKILEAAYKWKKQKLASSDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41770			crooked neck protein, putative...		Lus10034294 [exp]	0	1
AT1G14570			UBX domain-containing protein ...		Lus10039137 [exp]	1.0	0.8387
AT5G17690		AtLHP1, LHP1, T...	TERMINAL FLOWER 2, LIKE HETERO...		Lus10005669 [exp]	2.2	0.7966
AT2G37440			DNAse I-like superfamily prote...		Lus10024427 [exp]	4.2	0.7697
AT1G43190		PTB3	polypyrimidine tract-binding p...		Lus10018871 [exp]	5.7	0.8212
AT3G18640	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10020889 [exp]	8.5	0.8102
AT1G48050		KU80, ATKU80	ARABIDOPSIS THALIANA KU80 HOMO...		Lus10009294 [exp]	8.9	0.7861
AT1G33060	NAC	ANAC014	NAC 014 (.1.2)		Lus10005143 [exp]	9.4	0.7449
AT3G18165		MOS4	modifier of snc1,4 (.1)		Lus10041997 [exp]	11.2	0.7963
AT2G31440			unknown protein		Lus10027036 [exp]	11.7	0.7617
AT5G07670			RNI-like superfamily protein (...		Lus10038927 [exp]	13.9	0.8093

Compare expression of checked genes

Lus10034294 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.