Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25500 590 / 0 Plasma-membrane choline transporter family protein (.1.2.3) AT5G13760 126 / 6e-31 Plasma-membrane choline transporter family protein (.1) AT3G04440 74 / 5e-14 Plasma-membrane choline transporter family protein (.1) AT3G03700 74 / 6e-14 Plasma-membrane choline transporter family protein (.1) AT4G38640 47 / 3e-05 Plasma-membrane choline transporter family protein (.1) AT5G17830 46 / 4e-05 Plasma-membrane choline transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041476 [exp] 942 / 0 AT1G25500 624 / 0.0 Plasma-membrane choline transporter family protein (.1.2.3) Lus10005331 [exp] 128 / 2e-31 AT5G13760 714 / 0.0 Plasma-membrane choline transporter family protein (.1) Lus10039585 [exp] 126 / 5e-31 AT5G13760 719 / 0.0 Plasma-membrane choline transporter family protein (.1) Lus10035837 [exp] 45 / 0.0001 AT3G15380 561 / 0.0 Plasma-membrane choline transporter family protein (.1) Lus10025051 [exp] 45 / 0.0002 AT4G38640 674 / 0.0 Plasma-membrane choline transporter family protein (.1) Lus10036620 [exp] 44 / 0.0002 AT3G15380 1154 / 0.0 Plasma-membrane choline transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G118200 [exp] 659 / 0 AT1G25500 588 / 0.0 Plasma-membrane choline transporter family protein (.1.2.3) Potri.010G128100 [exp] 655 / 0 AT1G25500 581 / 0.0 Plasma-membrane choline transporter family protein (.1.2.3) Potri.001G261900 [exp] 128 / 1e-31 AT5G13760 640 / 0.0 Plasma-membrane choline transporter family protein (.1) Potri.009G056700 [exp] 122 / 1e-29 AT5G13760 639 / 0.0 Plasma-membrane choline transporter family protein (.1) Potri.019G040500 [exp] 76 / 2e-14 AT3G04440 422 / 6e-145 Plasma-membrane choline transporter family protein (.1) Potri.013G066100 [exp] 69 / 3e-12 AT3G03700 436 / 7e-151 Plasma-membrane choline transporter family protein (.1) Potri.009G132900 [exp] 49 / 8e-06 AT4G38640 631 / 0.0 Plasma-membrane choline transporter family protein (.1) Potri.011G121100 [exp] 46 / 5e-05 AT3G15380 1135 / 0.0 Plasma-membrane choline transporter family protein (.1) Potri.004G173600 [exp] 45 / 8e-05 AT4G38640 620 / 0.0 Plasma-membrane choline transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04515 [flax] [poplar] Choline_transpo Plasma-membrane choline transporter
Representative CDS sequence Show only first row Show all	>Lus10034295 pacid=23175842 polypeptide=Lus10034295 locus=Lus10034295.g ID=Lus10034295.BGIv1.0 annot-version=v1.0 ATGAGCGAGTTCCCAAGTTCCAGAAGCTCCTCCTCTGCTTCCGCTTCTACCGCTGATCAGATAGCGGGGAGGAGCCTCGGTGGCAGTCAAGCACTGGCTC TTGACGTACCCCGCAAATGGCATGATGTTTTCTGGTCAGGGATCTTTTCAGTTCATCTCATTGGAATTGGGTTTGCTCTTGCGATCTTGGGGCTTAGTAG CTTTAGGGAACTGGATAGGTTTAATTTTGATAGATATCGCAATGGGAAGTCGCATGGGTGGGGATATACTGAGGATTACTGGCCTATCTATGCTCTAGCT GGCGGAATTGGGCTTCTACTCGGCTCCGGTTGGTTGTTGATGCTTGGTTCGTTTGCAAATCAGATGATGAACATCTCGGTTCATATCTTCACTACTTACC TTGCCGTCGTTAGTGTCCTCTGTTTCTGGTGTGAGCAGTTTTTCTGGGGTGTCACCTTCGCAGTTGGCGCCGCCTTACAGTTTTTGTATGTCATATCCGT CATAGACCGACTGCCATTTACCATGCTGGTTCTGCGAAAGTCGGTGAAGATGGTGTGGAGTCTTCCTGATGTGATGAGAGTTGCATATGCTTTCATGGTT ATAATGCTATTATGGATGGGAATATGGTCTTTTGGAGCTGCTGGTGTGCTGGCTTTGAACCTGCCTGATGGTGGCGGCTGGTGGCTTCTTTTGGTTTTGT CAATAAGCTTATTTTGGACGGGTGCAGTGATATGCAATACGGTACATGTTATAGTTTCTGGAATGGTGTTCCTTGTTCTTATCCATGGTGGAAGAGAAGC AGCATCGATGCCTCCCAAATCATTGATGAAGTCTACGAGATATGCTCTGACGACATCTTTTGGCAGTATTTGCTACGGATCGCTCTTTACAGCTGCAATT CGAACTTTGCGTTGGGAGATCAGAGGATTGAGGTCAAAGATAGGCAAGAATGAGTGCTTGCTCTGCTGCGTTGATCTTTTGTTTCATCTTGTGGAGACTC TTGTCCGTTTCTTCAACAAGTATGCATATGTCCAGATAGCAGTATATGGGAAAGGTTTCAATCGTTCGGCAAGGGATGCGTGGGAGCTATTTCAGTCAAC TGGAGTTGAGTCTCTGGTTGCATATGACTGCTCAGGTGCTGTTCTGTTGATGGGAACAATTTTATGCGGGCTTATAACAGGAACGTGCGCCGCAGTTTGG ACTCATTTCAAGTGGGATGCTAAGAATGAGCGAATGCTCATGGTGGGATCCACTGCAATGCTGATGGGGATGGTCTTGTTTGTGGTAGTGTGTAAACCAA TAACGAATAGTGAGGGGTTTTTTGGTCAGGTTGGAGTAGTAATGGTGGTAGTGGAAAGTGCGGCAACGTCAATGTACATATGTTATGCAGAAGATCCGTT GCTAATCCACAGATGGGACGCCGAATTCTTCGACCAGTTATCAGAAACGTTACACCTGCGGCTTAGGCACAGAAGTGCTCGTGGACGAGAAGTATTGACC CACAATAGATTCGATGTTAATAATGCACCATAA
AA sequence Show only first row Show all	>Lus10034295 pacid=23175842 polypeptide=Lus10034295 locus=Lus10034295.g ID=Lus10034295.BGIv1.0 annot-version=v1.0 MSEFPSSRSSSSASASTADQIAGRSLGGSQALALDVPRKWHDVFWSGIFSVHLIGIGFALAILGLSSFRELDRFNFDRYRNGKSHGWGYTEDYWPIYALA GGIGLLLGSGWLLMLGSFANQMMNISVHIFTTYLAVVSVLCFWCEQFFWGVTFAVGAALQFLYVISVIDRLPFTMLVLRKSVKMVWSLPDVMRVAYAFMV IMLLWMGIWSFGAAGVLALNLPDGGGWWLLLVLSISLFWTGAVICNTVHVIVSGMVFLVLIHGGREAASMPPKSLMKSTRYALTTSFGSICYGSLFTAAI RTLRWEIRGLRSKIGKNECLLCCVDLLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQSTGVESLVAYDCSGAVLLMGTILCGLITGTCAAVW THFKWDAKNERMLMVGSTAMLMGMVLFVVVCKPITNSEGFFGQVGVVMVVVESAATSMYICYAEDPLLIHRWDAEFFDQLSETLHLRLRHRSARGREVLT HNRFDVNNAP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G25500			Plasma-membrane choline transp...		Lus10034295 [exp]	0	1
AT4G12840			Protein of unknown function (D...		Lus10041107 [exp]	13.0	0.8959
AT1G02305			Cysteine proteinases superfami...		Lus10010091 [exp]	27.0	0.8851
AT3G59660			C2 domain-containing protein /...		Lus10025600 [exp]	32.5	0.8884
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10027940 [exp]	37.4	0.8758
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Lus10021386 [exp]	42.8	0.8375
AT5G13500			unknown protein		Lus10009691 [exp]	45.9	0.8834
AT1G43130		LCV2	like COV 2 (.1)		Lus10028564 [exp]	47.9	0.8725
AT5G10270		CDKC;1	cyclin-dependent kinase C;1 (....		Lus10036106 [exp]	53.5	0.8656
AT1G19130			unknown protein		Lus10027661 [exp]	55.5	0.8812
AT5G46860		SGR3, ATVAM3, A...	SHOOT GRAVITROPISM 3, ARABIDOP...		Lus10030953 [exp]	55.7	0.8527

Compare expression of checked genes

Lus10034295 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.