Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68640 349 / 3e-116 bZIP PAN PERIANTHIA, bZIP transcription factor family protein (.1) AT5G06950 325 / 2e-108 bZIP TGA2, AHBP-1B bZIP transcription factor family protein (.1.2.3.4) AT3G12250 321 / 2e-107 bZIP BZIP45, TGA6 TGACG motif-binding factor 6 (.1.2.3.4.5) AT5G06960 306 / 4e-101 bZIP TGA5, OBF5 TGACG MOTIF-BINDING FACTOR 5, OCS-element binding factor 5 (.1.2) AT1G08320 264 / 2e-84 bZIP TGA9, bZIP21 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) AT5G06839 261 / 1e-82 bZIP TGA10, bZIP65 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) AT5G10030 239 / 1e-74 bZIP OBF4, TGA4 OCS ELEMENT BINDING FACTOR 4, TGACG motif-binding factor 4 (.1.2) AT5G65210 235 / 5e-74 bZIP TGA1 bZIP transcription factor family protein (.1.2.3.4.5.6) AT1G77920 229 / 6e-71 bZIP bZIP transcription factor family protein (.1) AT1G22070 228 / 2e-70 bZIP TGA3 TGA1A-related gene 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041475 [exp] 554 / 0 AT1G68640 444 / 4e-153 PERIANTHIA, bZIP transcription factor family protein (.1) Lus10026166 [exp] 344 / 9e-116 AT3G12250 514 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5) Lus10024140 [exp] 342 / 4e-115 AT3G12250 532 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5) Lus10008658 [exp] 331 / 1e-110 AT3G12250 521 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5) Lus10004876 [exp] 273 / 2e-85 AT1G08320 635 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Lus10023822 [exp] 263 / 4e-82 AT5G06839 491 / 2e-171 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) Lus10020610 [exp] 263 / 8e-82 AT1G08320 633 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Lus10035499 [exp] 256 / 4e-81 AT5G06839 377 / 1e-129 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) Lus10043387 [exp] 252 / 2e-78 AT1G08320 481 / 7e-168 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G118300 [exp] 400 / 3e-136 AT1G68640 456 / 8e-159 PERIANTHIA, bZIP transcription factor family protein (.1) Potri.001G029800 [exp] 330 / 8e-109 AT3G12250 423 / 4e-147 TGACG motif-binding factor 6 (.1.2.3.4.5) Potri.006G039000 [exp] 330 / 1e-108 AT5G06950 413 / 3e-143 bZIP transcription factor family protein (.1.2.3.4) Potri.016G036500 [exp] 327 / 2e-107 AT5G06950 410 / 2e-142 bZIP transcription factor family protein (.1.2.3.4) Potri.003G194600 [exp] 326 / 7e-107 AT3G12250 462 / 3e-162 TGACG motif-binding factor 6 (.1.2.3.4.5) Potri.006G058800 [exp] 289 / 5e-92 AT5G06839 540 / 0.0 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) Potri.016G049200 [exp] 273 / 3e-86 AT5G06839 551 / 0.0 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) Potri.009G164300 [exp] 265 / 5e-83 AT1G08320 574 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Potri.004G203400 [exp] 264 / 1e-82 AT1G08320 571 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Potri.007G085700 [exp] 242 / 1e-75 AT5G65210 523 / 0.0 bZIP transcription factor family protein (.1.2.3.4.5.6)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF00170 [flax] [poplar] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Lus10034296 pacid=23175912 polypeptide=Lus10034296 locus=Lus10034296.g ID=Lus10034296.BGIv1.0 annot-version=v1.0 ATGCAAACATCATCATCTCATCATCATCATCCCATCCCTTCTGCTATGTTCCAGTCCTCGGAAATGTACAGCAGTAGTACCCCTCTACTTCCACCATCTT TCTTTTTCAGAGGAGCAGCAGAGCAAAATGAAGAAGAAGAAGAAGAAGAAGAGGGTAGAAGAGTCCAAACGAGGTTTGGGGATATTGGAGAGCTCGATCA TCATCATCCTCCACAACCAACTTTCCATCACAACCATGCTTTTGATTTAAGCCCAAGCTCCTCCTCCATGTTCAGCCTGAAATCTGGGAATGTTGTCAAT GCTAATATTGTTCCAAGCAGCAGCAGCTGCTTGCTTCTCCCTTCTCCATTCATTACGAGTATTGGGTGCTTGGACACAGGGCAACAGCAATACATGTATG GGAAAGGGACAGGCAGCTTTGGCAATATTGACAACAACAACAACAACTGGGGAGACTCTAATTCTGGCGGGATGGCTGCAGATACTACTGACACTTCCAC AGATGTTGATACTACTGATGATCGACACCACCATCACCAGCAGCAACTTGGTGGCCAGCATGGCTCAGTTGTGGTGGTGGATTCCATTGATCAATCCAAC TGCAAAGTTGATGACCAAAAGACAAATCGAAGGTTGGCTCAAAATCGCGAAGCAGCACGAAAGAGCCGGCTTAGGAAGAAAGCTTATGTCCAGCAGCTTG AGAACAGTCGTCTAAAGCTTACCCAACTTGAGCAAGACCTACAACGTGCTCGCCAACAGGGAAATTTCACGGGTGATCATGGCCATTCAGCAGCGGGAAA TGATGCACTGGCATTCGACATGGACTATCAACGCTGGCTCGGGGAACATCAAAGGCTGATCAACGACCTAAGATCAGCAGCGAATTCTCCCATGAGTGAC AACAAGCTGCGCATTCTCGTAGATGGAGTGATGAGCCACTATGCTGAGATATTCAGGCTAAAGAGCATTGCTGCAAAGGCTGATGTATTCCACATTCTGT CAGGCTTGTGGAAGACTCCTGCTGAGAGATGTTTCATGTGGATTGGTGGATTTCGTTCTTCCGAACTTCTCAAGTTGGTGGGGATATGCAATCTGCAGCA GTCATCCCAGCAGGCAGAAGATGCATTATCACAAGGTATGGAAGCATTGCAACAGTCACTTGTGGACTCACTTTCTTCGACCTCTCTCCGTCCCGGTGCT GCTCCTGGTTGTGGTGTCAATGTGGCTGATTACATGGCCCAGATGGCTATTGCAATGGGCAAACTCACCACCCTTGAGAACTTCCTTCATCAGGCTGACC TTCTACGGCAGCAGACATTGCAACAGCTGCATCGAATACTGACGACTCGACAGGCTGCTAATGCTCTTCTTGTTATCAGTGACTACACTTCTCGTCTCAG GGCCCTTAGCTCGTTATGGTTGGCTCGACCTAGGAACTGA
AA sequence Show only first row Show all	>Lus10034296 pacid=23175912 polypeptide=Lus10034296 locus=Lus10034296.g ID=Lus10034296.BGIv1.0 annot-version=v1.0 MQTSSSHHHHPIPSAMFQSSEMYSSSTPLLPPSFFFRGAAEQNEEEEEEEEGRRVQTRFGDIGELDHHHPPQPTFHHNHAFDLSPSSSSMFSLKSGNVVN ANIVPSSSSCLLLPSPFITSIGCLDTGQQQYMYGKGTGSFGNIDNNNNNWGDSNSGGMAADTTDTSTDVDTTDDRHHHHQQQLGGQHGSVVVVDSIDQSN CKVDDQKTNRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQLEQDLQRARQQGNFTGDHGHSAAGNDALAFDMDYQRWLGEHQRLINDLRSAANSPMSD NKLRILVDGVMSHYAEIFRLKSIAAKADVFHILSGLWKTPAERCFMWIGGFRSSELLKLVGICNLQQSSQQAEDALSQGMEALQQSLVDSLSSTSLRPGA APGCGVNVADYMAQMAIAMGKLTTLENFLHQADLLRQQTLQQLHRILTTRQAANALLVISDYTSRLRALSSLWLARPRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68640	bZIP	PAN	PERIANTHIA, bZIP transcription...		Lus10034296 [exp]	0	1
AT4G26400			RING/U-box superfamily protein...		Lus10043027 [exp]	6.6	0.9508
AT5G50770		ATHSD6	hydroxysteroid dehydrogenase 6...		Lus10022441 [exp]	7.5	0.9454
AT1G12780		ATUGE1, UGE1	A. THALIANA UDP-GLC 4-EPIMERAS...		Lus10029572 [exp]	11.8	0.9499
AT1G68640	bZIP	PAN	PERIANTHIA, bZIP transcription...		Lus10041475 [exp]	12.6	0.9014
AT2G19900		ATNADP-ME1	Arabidopsis thaliana NADP-mali...		Lus10012964 [exp]	15.2	0.9342
AT4G26260		MIOX4	myo-inositol oxygenase 4 (.1.2...		Lus10012923 [exp]	18.1	0.9384
AT1G12780		ATUGE1, UGE1	A. THALIANA UDP-GLC 4-EPIMERAS...		Lus10002246 [exp]	19.4	0.9416
AT5G57655			xylose isomerase family protei...		Lus10001321 [exp]	20.2	0.9396
AT5G37600		ATGLN1;1, GLN1;...	ARABIDOPSIS THALIANA GLUTAMINE...		Lus10012536 [exp]	21.2	0.9325
AT2G20210			RNI-like superfamily protein (...		Lus10022840 [exp]	21.5	0.9071

Compare expression of checked genes

Lus10034296 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.