Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021697 [exp] 43 / 2e-05 AT1G25520 94 / 5e-23 Uncharacterized protein family (UPF0016) (.1) Lus10035040 [exp] 42 / 4e-05 AT1G25520 339 / 4e-116 Uncharacterized protein family (UPF0016) (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034297 pacid=23175855 polypeptide=Lus10034297 locus=Lus10034297.g ID=Lus10034297.BGIv1.0 annot-version=v1.0 ATGATGTACGAGAAGGAAGATTATAGCGACTATAGCGATGATGCTTTCTACTTGGAGATTCGGAGGCAGATTCTGCTTCTCACTGCAGACCAACAAGGTG ATGATGATGATGGGAGACGGAAGGGTACGCCGTGCCGTGGCAGAGCAATGGAGTCGGCGGGGAGGTATTTCAGCTGGTGCGAGGAGGGTACTAGCAATGA TAGAAGATTTGGTGATTGTTCCGTAACGCCGCCGGATTGGCTAGTGGATTTATGGAGAAGTAGCAACAGTACTGTGGGTGGTAATAATGTTGTCGGGACT GGAGTTTTCATCCCTCGGATAATCGTCAAAACCAGAGGACGAAGAAATAACAGACCCAGGAGGAAGAAAAGTGAAGGAAACAAGACGACCAAACAACTCC TGCACATCTAG
AA sequence Show only first row Show all	>Lus10034297 pacid=23175855 polypeptide=Lus10034297 locus=Lus10034297.g ID=Lus10034297.BGIv1.0 annot-version=v1.0 MMYEKEDYSDYSDDAFYLEIRRQILLLTADQQGDDDDGRRKGTPCRGRAMESAGRYFSWCEEGTSNDRRFGDCSVTPPDWLVDLWRSSNSTVGGNNVVGT GVFIPRIIVKTRGRRNNRPRRKKSEGNKTTKQLLHI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10034297 [exp]	0	1
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10035635 [exp]	3.2	0.8511
AT2G40200	bHLH	bHLH051	basic helix-loop-helix (bHLH) ...		Lus10028978 [exp]	6.8	0.8460
					Lus10039994 [exp]	11.8	0.7908
					Lus10011351 [exp]	13.9	0.7951
AT1G47270	TUB	AtTLP6	tubby like protein 6 (.1.2)		Lus10010645 [exp]	14.7	0.8155
AT2G39730		RCA	rubisco activase (.1.2.3)		Lus10002710 [exp]	16.2	0.8448
AT5G01850			Protein kinase superfamily pro...		Lus10025236 [exp]	18.5	0.8019
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10010591 [exp]	20.3	0.8245
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10016176 [exp]	25.2	0.8308
AT2G36270	bZIP	EEL, GIA1, ABI5	GROWTH-INSENSITIVITY TO ABA 1,...		Lus10014194 [exp]	28.6	0.8179

Compare expression of checked genes

Lus10034297 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.