Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14870 157 / 3e-49 AtPCR2, PCR2 PLANT CADMIUM RESISTANCE 2 (.1) AT5G35525 145 / 6e-45 PLAC8 family protein (.1) AT1G68610 140 / 1e-42 PCR11 PLANT CADMIUM RESISTANCE 11 (.1) AT1G14880 138 / 7e-42 AtPCR1, PCR1 PLANT CADMIUM RESISTANCE 1 (.1) AT3G18470 131 / 2e-39 PLAC8 family protein (.1) AT3G18460 131 / 9e-39 PLAC8 family protein (.1) AT1G49030 127 / 1e-36 PLAC8 family protein (.1) AT3G18450 118 / 1e-33 PLAC8 family protein (.1) AT1G68630 116 / 3e-33 PLAC8 family protein (.1) AT1G58320 112 / 1e-31 PLAC8 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041474 [exp] 224 / 7e-76 AT1G14870 112 / 3e-32 PLANT CADMIUM RESISTANCE 2 (.1) Lus10021696 [exp] 212 / 2e-70 AT1G14870 177 / 5e-57 PLANT CADMIUM RESISTANCE 2 (.1) Lus10043325 [exp] 161 / 1e-50 AT1G14870 187 / 4e-61 PLANT CADMIUM RESISTANCE 2 (.1) Lus10019478 [exp] 158 / 3e-49 AT1G14870 184 / 7e-60 PLANT CADMIUM RESISTANCE 2 (.1) Lus10004063 [exp] 115 / 6e-33 AT1G68630 132 / 2e-40 PLAC8 family protein (.1) Lus10009036 [exp] 112 / 1e-31 AT1G68630 122 / 2e-36 PLAC8 family protein (.1) Lus10035039 [exp] 105 / 2e-29 AT5G35525 78 / 2e-19 PLAC8 family protein (.1) Lus10008890 [exp] 100 / 7e-27 AT1G68630 119 / 6e-35 PLAC8 family protein (.1) Lus10004064 [exp] 90 / 5e-21 AT4G30040 156 / 3e-41 Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G127700 [exp] 192 / 2e-62 AT1G68610 174 / 5e-56 PLANT CADMIUM RESISTANCE 11 (.1) Potri.010G108800 [exp] 177 / 8e-57 AT1G14870 179 / 8e-58 PLANT CADMIUM RESISTANCE 2 (.1) Potri.008G132900 [exp] 174 / 8e-56 AT1G14870 189 / 7e-62 PLANT CADMIUM RESISTANCE 2 (.1) Potri.008G132775 [exp] 174 / 9e-56 AT1G14870 185 / 2e-60 PLANT CADMIUM RESISTANCE 2 (.1) Potri.008G132850 [exp] 169 / 1e-53 AT1G14870 184 / 6e-60 PLANT CADMIUM RESISTANCE 2 (.1) Potri.010G109100 [exp] 164 / 1e-51 AT1G14870 165 / 1e-52 PLANT CADMIUM RESISTANCE 2 (.1) Potri.007G042800 [exp] 155 / 1e-48 AT1G14870 152 / 7e-48 PLANT CADMIUM RESISTANCE 2 (.1) Potri.012G092200 [exp] 154 / 1e-47 AT1G14870 164 / 2e-52 PLANT CADMIUM RESISTANCE 2 (.1) Potri.010G108900 [exp] 153 / 3e-47 AT1G14870 142 / 4e-43 PLANT CADMIUM RESISTANCE 2 (.1) Potri.012G060900 [exp] 130 / 2e-36 AT1G49030 199 / 2e-62 PLAC8 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04749 [flax] [poplar] PLAC8 PLAC8 family
Representative CDS sequence Show only first row Show all	>Lus10034298 pacid=23176059 polypeptide=Lus10034298 locus=Lus10034298.g ID=Lus10034298.BGIv1.0 annot-version=v1.0 ATGCATGATGAAAATCCTCGGACCCCACCGCTGCCGCCCATGTTCCAAGGCGTCCTTCCTCCTCCTCCGGCCGCCGCCGCATTCACTCCTGCTGCCATCC CCGCCGATTCTCCCTCGCCGTGGTCAACCGGCCTTTGTGATTGTCTCGAGGATTGGTCCTCTTGTTGCTTGACGGTTTGGTGCCCGTGCATTACATTTGG TCGGATTGCTGAGGTGGTCGACAGAGGTTCAACACCGTGCGCATTGAACGGGGCGTTGTACGCGCTGATGCTGTGGATGTTCGGGTGCACGTGTCTACTG TCGTGTTTTTACAGGGCGAAGATGAGAGGGCAATGGTCGTTAGAAGAGAAGCCCTGTGCTGACTGCTGCGTCCATCTCTTCTGCGAGGGGTGCGCTCTTT GCCAGGAGTACCGCGAGCTCCAGAACAAGGGCTTCGACTTGTCCATGGGATGGCATGGAAACGCGGAGAGGTTCAGGAGAATTGCTGCTGCTACTACTAC TACCTCGGCTCCCACGGTTGAAGAACAGATGAGAAGAGATCAAAGGGATTTTTAA
AA sequence Show only first row Show all	>Lus10034298 pacid=23176059 polypeptide=Lus10034298 locus=Lus10034298.g ID=Lus10034298.BGIv1.0 annot-version=v1.0 MHDENPRTPPLPPMFQGVLPPPPAAAAFTPAAIPADSPSPWSTGLCDCLEDWSSCCLTVWCPCITFGRIAEVVDRGSTPCALNGALYALMLWMFGCTCLL SCFYRAKMRGQWSLEEKPCADCCVHLFCEGCALCQEYRELQNKGFDLSMGWHGNAERFRRIAAATTTTSAPTVEEQMRRDQRDF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14870		AtPCR2, PCR2	PLANT CADMIUM RESISTANCE 2 (.1...		Lus10034298 [exp]	0	1

Compare expression of checked genes

Lus10034298 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.