Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25800 1102 / 0 PP2AA2, PR65, PDF1 protein phosphatase 2A subunit A2 (.1.2) AT1G13320 1067 / 0 PR65, PDF2, PP2AA3 protein phosphatase 2A subunit A3 (.1.2.3) AT1G25490 1031 / 0 REGA, PR65, EER1, ATBBETABETA, RCN1 ROOTS CURL IN NPA, ENHANCED ETHYLENE RESPONSE 1, ARM repeat superfamily protein (.1) AT5G64270 49 / 8e-06 splicing factor, putative (.1) AT1G64790 45 / 0.0002 ILA ILITYHIA (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035038 [exp] 1126 / 0 AT3G25800 1134 / 0.0 protein phosphatase 2A subunit A2 (.1.2) Lus10021695 [exp] 1122 / 0 AT3G25800 1129 / 0.0 protein phosphatase 2A subunit A2 (.1.2) Lus10041472 [exp] 836 / 0 AT3G25800 867 / 0.0 protein phosphatase 2A subunit A2 (.1.2) Lus10003101 [exp] 49 / 1e-05 AT1G64790 2349 / 0.0 ILITYHIA (.1.2) Lus10033347 [exp] 47 / 4e-05 AT5G64270 2168 / 0.0 splicing factor, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G127500 [exp] 1099 / 0 AT3G25800 1086 / 0.0 protein phosphatase 2A subunit A2 (.1.2) Potri.008G118500 [exp] 1087 / 0 AT3G25800 1115 / 0.0 protein phosphatase 2A subunit A2 (.1.2) Potri.012G062700 [exp] 1073 / 0 AT3G25800 1116 / 0.0 protein phosphatase 2A subunit A2 (.1.2) Potri.019G024200 [exp] 48 / 2e-05 AT1G64790 3726 / 0.0 ILITYHIA (.1.2) Potri.001G310900 [exp] 48 / 2e-05 AT5G64270 2001 / 0.0 splicing factor, putative (.1) Potri.017G050800 [exp] 48 / 2e-05 AT5G64270 2020 / 0.0 splicing factor, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF02985 [flax] [poplar] HEAT HEAT repeat
Representative CDS sequence Show only first row Show all	>Lus10034299 pacid=23175956 polypeptide=Lus10034299 locus=Lus10034299.g ID=Lus10034299.BGIv1.0 annot-version=v1.0 ATGGCCATGGTTGACGAACCACTATATCCCATTGCTGTCCTCATAGACGAGCTCAAGAATGATGACATCCAGCTACGACTGAACTCAATTCGTCGACTGT CAACAATTGCACGTGCTCTTGGCGAGGAGCGAACCCGTAAGGAGTTAATTCCTTTCCTGAGTGAAAACAATGATGACGATGATGAGGTACTCCTTGCAAT GGCCGAAGAGTTGGGAGTGTTTATTCCATATGTTGGTGGAATGGAGCATGCCCATGTTTTGCTGCCACCTTTGGAGACATTGTGCACTGTTGAGGAGACA TCTGTTAGAGACAAAGCCGTTGAGTCATTGTGTAGGATTGGGTCTCAAATGAGGGAAAGTGATTTGGTTGATTGGTTCATCCCCCTTGTCAAGAGATTGG CTGCTGGGGAATGGTTTACTGCTCGTGTTTCTTCTTGTGGTCTATTCCATATTGCTTATCCCAGTGCACCAGATATGCTGAAGGCTGAATTACGCTCCAT ATACAGCCAGCTCTGTCAAGATGACATGCCAATGGTTAGGAGGGCTGCTGCAACCAATCTTGGGAAGTATGCTGCCACTGTTGAAGCTGCACATCTGAAG GCTGATGTCATGTCAATGTTTGACGATCTTACCCAAGATGATCAAGATTCTGTACGTTTGTTGGCTGTTGAGGGTTGTGCTGCACTTGGAAAACTGTTGG AGCCCCAGGAATGCATTGCACATATTCTCCCTGTTATTGTGAATTTTTCACAGGACAAATCATGGCGTGTACGTTACATGGTTGCAAACCAATTGTATGA ACTTTGTGAAGCTGTGGGGCCTGAGCCTACCAAGTACATTCCTAATCTGAAACAATTCAGCTGTTATATCTCTTACTGTTGGACGGACTTGGTACCTGCA TATGTGCGGTTACTTCGTGATAACGAGGCGGAAGTGCGTATTGCTGCTGCTGGAAAAGTAACTAAATTCTGTCGCATCTTGACCCCCGAACTAGCAGTTC AGCACATTCTTCCTTGTGTGAAGGAACTCTCATCAGATTCTTCCCAGCATGTCCGTTCTGCTTTGGCTTCAGTGATAATGGGAATGGCTCCTGTATTAGG CAAGGATGCTACAATAGAGCAGCTGCTTCCGATATTTCTTTCACTTTTGAAAGATGAATTTCCTGATGTGCGGCTCAACATTATAAGCAAGCTTGATCAA GTGAATCAGGTTATTGGAATTGATCTTCTCTCTCAGTCTTTACTGCCGGCAATTGTTGAGCTTGCTGAGGATAGACATTGGAGGGTTAGGCTTGCAATTA TAGAGTACATACCCCTATTGGCAAGTCAGTTGGGTGTTGGTTTCTTCGATGATAAGCTTGGAACTCTCTGCATGCAGTGGTTGCAGGATAAGGTTTGCTC AATTCGTGATGCTGCTGCTAATAATTTGAAGCGCCTTGCTGAAGAATTTGGTCCTGAGTGGGCAATGGAGCACATAATCCCACAGGTTCTGGAACTGTTC AACAACCCCCACTACTTATACAGGATGACCATTCTCCGTGCTAGCTCTCTTATTGCTCCTGTGATGGGCGCTGAGATAACATGTTCAAAACTGCTGCCAC CGATTATCAATGCAGCAAAGGACAGGGTACCCAACATCAAGTTCAATGTGGCAAAGGTGCTACAGACCCTCATTCCGATCGTTGATCAGTCCGTGGTGGA GAAGTCGATTCGTCCTGCTCTAGTGGAGCTAAGCGAGGACCCTGACGTTGACGTGCGTTTCTTTGCCAATGAAGCACTTCATGTGATCGACAACACGATG ATGTCTGGCTAG
AA sequence Show only first row Show all	>Lus10034299 pacid=23175956 polypeptide=Lus10034299 locus=Lus10034299.g ID=Lus10034299.BGIv1.0 annot-version=v1.0 MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGMEHAHVLLPPLETLCTVEET SVRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSSCGLFHIAYPSAPDMLKAELRSIYSQLCQDDMPMVRRAAATNLGKYAATVEAAHLK ADVMSMFDDLTQDDQDSVRLLAVEGCAALGKLLEPQECIAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTKYIPNLKQFSCYISYCWTDLVPA YVRLLRDNEAEVRIAAAGKVTKFCRILTPELAVQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQ VNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGTLCMQWLQDKVCSIRDAAANNLKRLAEEFGPEWAMEHIIPQVLELF NNPHYLYRMTILRASSLIAPVMGAEITCSKLLPPIINAAKDRVPNIKFNVAKVLQTLIPIVDQSVVEKSIRPALVELSEDPDVDVRFFANEALHVIDNTM MSG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25800		PP2AA2, PR65, P...	protein phosphatase 2A subuni...		Lus10034299 [exp]	0	1
AT5G27490			Integral membrane Yip1 family ...		Lus10004473 [exp]	1.0	0.8543
AT1G53750		RPT1A	regulatory particle triple-A 1...		Lus10031243 [exp]	1.7	0.8070
AT3G57890			Tubulin binding cofactor C dom...		Lus10023821 [exp]	8.5	0.8152
AT1G78300		14-3-3OMEGA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Lus10008715 [exp]	9.8	0.7614
AT1G35780			unknown protein		Lus10033456 [exp]	11.0	0.7748
AT3G24350		ATSYP32, SYP32	syntaxin of plants 32 (.1.2)		Lus10033080 [exp]	11.7	0.7821
AT3G17440		ATNPSN13, NPSN1...	novel plant snare 13 (.1.2)		Lus10017116 [exp]	18.1	0.7750
AT5G25510			Protein phosphatase 2A regulat...		Lus10033069 [exp]	21.0	0.7659
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Lus10002178 [exp]	21.2	0.7715
AT1G14830		DRP1C, ADL5, AD...	DYNAMIN RELATED PROTEIN 1C, AR...		Lus10019170 [exp]	22.1	0.7785

Compare expression of checked genes

Lus10034299 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.