Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36220 660 / 0 CYP84A1, FAH1, F5H1 ferulic acid 5-hydroxylase 1 (.1) AT5G04330 577 / 0 Cytochrome P450 superfamily protein (.1) AT3G26310 323 / 5e-105 CYP71B35 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) AT5G07990 315 / 7e-102 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT4G31500 314 / 1e-101 SUR2, RNT1, RED1, ATR4, CYP83B1 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) AT3G26300 313 / 3e-101 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT3G26320 309 / 2e-99 CYP71B36 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) AT4G12320 306 / 3e-98 CYP706A6 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) AT3G26330 303 / 3e-97 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) AT5G57260 300 / 4e-96 CYP71B10 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041511 [exp] 929 / 0 AT4G36220 687 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10022303 [exp] 897 / 0 AT4G36220 680 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10012582 [exp] 800 / 0 AT4G36220 578 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10000326 [exp] 740 / 0 AT4G36220 523 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10014273 [exp] 716 / 0 AT4G36220 721 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10028361 [exp] 715 / 0 AT4G36220 725 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10025975 [exp] 711 / 0 AT4G36220 728 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10041811 [exp] 663 / 0 AT4G36220 667 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10012583 [exp] 377 / 1e-130 AT4G36220 313 / 8e-106 ferulic acid 5-hydroxylase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G117500 [exp] 696 / 0 AT4G36220 728 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Potri.007G016400 [exp] 694 / 0 AT4G36220 761 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Potri.009G123600 [exp] 632 / 0 AT4G36220 672 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Potri.007G084700 [exp] 353 / 9e-117 AT5G07990 397 / 5e-134 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G085000 [exp] 355 / 1e-116 AT5G07990 402 / 5e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G084200 [exp] 351 / 5e-116 AT3G26300 385 / 1e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G082900 [exp] 347 / 3e-114 AT3G26300 377 / 2e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.016G137600 [exp] 346 / 8e-114 AT3G48270 401 / 2e-135 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) Potri.007G084800 [exp] 345 / 1e-113 AT3G26300 380 / 3e-127 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G083000 [exp] 345 / 1e-113 AT3G26330 368 / 8e-123 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10034300 pacid=23175924 polypeptide=Lus10034300 locus=Lus10034300.g ID=Lus10034300.BGIv1.0 annot-version=v1.0 ATGGGTTCTATGTTCCTAGTATTTCTCATCGCGATCATCATCCCTTTCCTCCTCGTACTGATGTTCCTCCGCCGTGGCCGCAGCAGCCTACCTCTCCCTC CGGGCCCCAGAGGACTCCCAATCATAGGGAACATGTTGATGATGGACCAATTCACCCACCACGGCTTAGCCAAACTTGCCAAGCAATACGGCGGCTTGTT CCATCTTCGTATGGGGAACGTCCATATGATGACCGTCTCCTCCCCCGATATCGCTAAGCAAGTTCTCAAGGTCCACGGCAACATCTTCTCCAACCGGCCA ACAAACATCGCTATCAACTACCTCACCTACGACCGTTCCGATATGGCATTTGCTAACTACGGTCCCTTTTGGCGTCAGATGAGAAAGATCACGGTCATGA AGCTCTTCAGCAGGAGGAGGGCTGAGTCTTGGGACTCGGTTAGGGACGAGATCGCTTCCATGGTTCAAACCGTGGCTGCCAACCCAGCTGGAAACCCTAT CAATGTCGGGGAGCTTATATTTACCTTCACTATGAATCTTACTTATAAGGCCGCCTTTGGGACCTCCACCAAGATGAATGACCAGATGCAGGAGTTCATT AAGATACTCCAAGAGTTCTCCAGACTCTTTGGAGCTTTCAACATTGCTGACTTCATCCCCTTTCTTGGTTGGATGGACCCGCAAGGCCTTCGTCCTAGGA TGGTCAACGCAAGGTCCTCCCTCGACAACTTCATCGACCAAATCATTGATGATCATCTTCGTACTCAAGATCATGACTTTCGTAATCCCGACATGGTTGA TGAGTTGCTTGCTTTCTACACTCCCCATCAACCAACGAATAATTCCAATCTTGTCCTCGATGCCGACTCCACCACTACTGCACCAATTAACCTCACCAAA AACAACATCAAAGCCATTATCATGGATGTCATGTTTGGTGGGACCGAGACTGTTGCTTCCATAATCGAGTGGGCTATGGCCGAGTTATTGAAGAGTCCTC TAGATTTAAAGCGGGTACAGCAAGAGCTATTTGACGTTGTTGGGCTCAACCGCCACGTGGAAGAGAAGGACTTGGAGAAGTTAACCTTCCTCAAGTGCAT CTTGAAAGAGACTCTTCGTCTCCACCCTGCAATCCCTCTTCTCCTCCACGAAACTGCTGAGGATGTTGAGGTGTCCGGTTACTTCATCCCCAAAAGGTCT CGAATCATGGTTAATGCTTTTGCTATCAGCCGAGACCCCAACTCTTGGTCCAATCCCGACGAGTTCATCCCATCAAGGTTCTTGAATGAAGGCATGCCTG ACTTCAAGGGGAACAACTTCGAGTTCCTGCCTTTTGGTTCAGGGCGTAGGTCATGTCCTGGCATGCAACTCGGCTTGTATGCAATCGAACTTGGAATGGC TCACCTTCTCCATGACTTTAATTGGGAATTACCTTATGGGATGAAACCCAATGAAGTTGACATGAGTGATGTCTTCGGACTTACTGCTCCACGTGCTACC CGACTCATTGCTGTTCCTACCTCTCGGCTTGCTTGTTAA
AA sequence Show only first row Show all	>Lus10034300 pacid=23175924 polypeptide=Lus10034300 locus=Lus10034300.g ID=Lus10034300.BGIv1.0 annot-version=v1.0 MGSMFLVFLIAIIIPFLLVLMFLRRGRSSLPLPPGPRGLPIIGNMLMMDQFTHHGLAKLAKQYGGLFHLRMGNVHMMTVSSPDIAKQVLKVHGNIFSNRP TNIAINYLTYDRSDMAFANYGPFWRQMRKITVMKLFSRRRAESWDSVRDEIASMVQTVAANPAGNPINVGELIFTFTMNLTYKAAFGTSTKMNDQMQEFI KILQEFSRLFGAFNIADFIPFLGWMDPQGLRPRMVNARSSLDNFIDQIIDDHLRTQDHDFRNPDMVDELLAFYTPHQPTNNSNLVLDADSTTTAPINLTK NNIKAIIMDVMFGGTETVASIIEWAMAELLKSPLDLKRVQQELFDVVGLNRHVEEKDLEKLTFLKCILKETLRLHPAIPLLLHETAEDVEVSGYFIPKRS RIMVNAFAISRDPNSWSNPDEFIPSRFLNEGMPDFKGNNFEFLPFGSGRRSCPGMQLGLYAIELGMAHLLHDFNWELPYGMKPNEVDMSDVFGLTAPRAT RLIAVPTSRLAC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10034300 [exp]	0	1
					Lus10024873 [exp]	2.2	0.9766
AT1G14205			Ribosomal L18p/L5e family prot...		Lus10030465 [exp]	2.4	0.9618
					Lus10021010 [exp]	3.5	0.9692
AT5G52400		CYP715A1	"cytochrome P450, family 715, ...		Lus10027480 [exp]	4.2	0.9711
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10033385 [exp]	6.0	0.9460
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10006700 [exp]	9.0	0.9358
AT4G08250	GRAS		GRAS family transcription fact...		Lus10008316 [exp]	10.8	0.9655
AT5G05600			2-oxoglutarate (2OG) and Fe(II...		Lus10004808 [exp]	19.0	0.9627
AT1G16130		WAKL2	wall associated kinase-like 2 ...		Lus10003063 [exp]	21.6	0.9305
					Lus10011681 [exp]	22.0	0.9410

Compare expression of checked genes

Lus10034300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.