Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18440 528 / 0 ATALMT9 aluminum-activated malate transporter 9 (.1) AT1G68600 478 / 2e-164 Aluminium activated malate transporter family protein (.1) AT1G25480 478 / 5e-164 Aluminium activated malate transporter family protein (.1) AT2G17470 464 / 5e-159 AtALMT6, ALMT6 ALuminium activated Malate Transporter 6, Aluminium activated malate transporter family protein (.1) AT1G18420 462 / 1e-157 Aluminium activated malate transporter family protein (.1) AT1G08440 212 / 7e-62 Aluminium activated malate transporter family protein (.1) AT4G17970 213 / 1e-61 ATALMT12, ALMT12 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) AT5G46600 211 / 3e-61 Aluminium activated malate transporter family protein (.1) AT5G46610 210 / 6e-61 Aluminium activated malate transporter family protein (.1.2.3) AT1G08430 209 / 6e-61 ALMT1, ATALMT1 ARABIDOPSIS THALIANA ALUMINUM-ACTIVATED MALATE TRANSPORTER 1, aluminum-activated malate transporter 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027657 [exp] 528 / 0 AT3G18440 711 / 0.0 aluminum-activated malate transporter 9 (.1) Lus10021694 [exp] 461 / 4e-157 AT1G25480 524 / 0.0 Aluminium activated malate transporter family protein (.1) Lus10039926 [exp] 321 / 6e-106 AT3G18440 403 / 6e-138 aluminum-activated malate transporter 9 (.1) Lus10024710 [exp] 274 / 2e-86 AT3G18440 296 / 1e-94 aluminum-activated malate transporter 9 (.1) Lus10004556 [exp] 230 / 2e-68 AT4G17970 649 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10000898 [exp] 226 / 1e-66 AT4G17970 666 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10013577 [exp] 222 / 1e-65 AT3G11680 524 / 0.0 Aluminium activated malate transporter family protein (.1) Lus10035037 [exp] 221 / 1e-65 AT1G25480 295 / 3e-94 Aluminium activated malate transporter family protein (.1) Lus10021272 [exp] 221 / 3e-65 AT3G11680 535 / 0.0 Aluminium activated malate transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G127400 [exp] 630 / 0 AT3G18440 588 / 0.0 aluminum-activated malate transporter 9 (.1) Potri.015G053400 [exp] 534 / 0 AT3G18440 681 / 0.0 aluminum-activated malate transporter 9 (.1) Potri.008G118600 [exp] 522 / 0 AT1G25480 646 / 0.0 Aluminium activated malate transporter family protein (.1) Potri.001G097300 [exp] 293 / 3e-92 AT3G18440 307 / 2e-97 aluminum-activated malate transporter 9 (.1) Potri.003G134100 [exp] 286 / 5e-90 AT3G18440 306 / 2e-97 aluminum-activated malate transporter 9 (.1) Potri.001G144300 [exp] 242 / 7e-73 AT4G17970 634 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Potri.001G217400 [exp] 215 / 3e-63 AT1G08440 451 / 2e-155 Aluminium activated malate transporter family protein (.1) Potri.009G017900 [exp] 212 / 3e-62 AT1G08440 389 / 3e-131 Aluminium activated malate transporter family protein (.1) Potri.002G174600 [exp] 212 / 5e-62 AT4G00910 533 / 0.0 Aluminium activated malate transporter family protein (.1) Potri.009G017800 [exp] 211 / 7e-62 AT2G27240 451 / 2e-155 Aluminium activated malate transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0307 [flax] [poplar] FUSC PF11744 [flax] [poplar] ALMT Aluminium activated malate transporter
Representative CDS sequence Show only first row Show all	>Lus10034301 pacid=23175995 polypeptide=Lus10034301 locus=Lus10034301.g ID=Lus10034301.BGIv1.0 annot-version=v1.0 ATGGCAGGTAGAGAAACGCTGCTGCGGGTGGGAAGCTTGAAGCAGAGATACGATGACGACGACGACTACGAAGAAGAAGTAGAGAATTTCAAGTGTGTTA CTCTGTTTCGGGAAAAGATAAACAGGGGATGTAAGGATTTGAGGGAATTCGCAAGGAAAGCAGTGGAGATGGGCCGATCGGATCCAATGAAGGTGATATT CGCTGCGAAAATGGGGATGACGCTGGCCATTGTTTCGCTGCTCATCTGCTGGAAAGGGATGCCTGATGATATTTCTCAATACTCCATTTGGGCAATCCTC ACCGTAATTGTCATGTTCGAATTCAGTATAGGTGCAACCTTGATAAAAGGATTCAATCGGTGTTTGGGCACTTTCTTCGCCGGAATGCTTGCTTTCGGAT TCGCCGAGCTCTCCCTGGTGGCCGGGGAATGGGAGCAAGTTGTAATTGTGATGAGCATTTTCCTTATAGGGTTCTGTTCATCGTACCTGAAGCTGTACCC GACAATGAAGCCGTACGAATACGGATTCCGAGTATTTACACTGACATACTGCATCCTAATGGTGGCCGGAAACAGAACCCGCCAATACACGGAGGCAGTA GTCACAAGATTGGTATTGATAGCGTTGGGTGCTAGCGTCTGTTTGGTCGTCAACCTTTGCGTCTTCCCGATATGGGCGGGAGACGCATTGCACGCCTCGG TCGTGAAGAATTTTGAAGACCTGGCATCTTCTCTGGAAGATTGTGTTAGTGGGTACTTGAAGTGTGTGGAGTACGAGAGGATTCCGTCAATGATCCTGAC GTTCCAGGCTTATGATGACCCACTTTACAATGCTTATAGATCGGTGGTTGAATCCGCGGGCAACGAGGACACCCTGTTGGGGTTTGCTGTTTGGGAACCT CCCCATGGTCGGTTCAGGAAGTTTAGTTATCCATGGAGAAACTACACAAAAGTAAGCGGGGCCCTGAGGCATTGTGCATTTATGGTCATGGCTCTCCATG GATGCATCCTTTCTGAAATCCAGGCTCCAGCGGAAAGGCGACAAGTATTGGCAAAGGAGCTCGAAAGAGTTGGTATCGAAGGAGCCAAAGTACTACGAAA GATAGGGAACAAACTTAACCACATGGAGAAGCTAGGAGGTGGAGAAGCACCACTACTAGACAGTAACATCCTAAACGACATCCACGAAGCTGCAGACCTC CTCCAGAACAAGATCGACCGTAAATCCCATCTCCTTCTCAACCCTGCAGATCAGACCAGCTTCCCCGCAATTTCCAGACAAGATTCCGAGAATGTCCAAA CCGATTTAAGCGAAAACCCGGATCTGCAGTTGGGAATCAAGTCGTTGAGTGAAGCAGTGCTGGACTTGAGGACAATCCAGTTAGTTAAATGGCCTTCTCG AGCGAACTCGATTTATATGGAATCAGCAGGAGGAGGAGGAGATGGGAGCGTAAGGACTTACGAGAGTGCGAGTGCTTTGTCGCTCGCTACGTTTGCTTCC TTGTTGATTGAGTTTGTTGCCAGGCTGCAGAATGTGGTTGATTCGTACCAGGAATTGAGTGAGAAAGCTGGGTTTCTGGAGGCTAAGGATGTTCAAGATT CTTGTCCTGTTCTTGAGCGGAGGCGAGTTGGAGTTTGTAGTTGGGTGTTTAGTTGCTTTGGGTTGTTGAAAAGAAGCTCTTTGGTTTAG
AA sequence Show only first row Show all	>Lus10034301 pacid=23175995 polypeptide=Lus10034301 locus=Lus10034301.g ID=Lus10034301.BGIv1.0 annot-version=v1.0 MAGRETLLRVGSLKQRYDDDDDYEEEVENFKCVTLFREKINRGCKDLREFARKAVEMGRSDPMKVIFAAKMGMTLAIVSLLICWKGMPDDISQYSIWAIL TVIVMFEFSIGATLIKGFNRCLGTFFAGMLAFGFAELSLVAGEWEQVVIVMSIFLIGFCSSYLKLYPTMKPYEYGFRVFTLTYCILMVAGNRTRQYTEAV VTRLVLIALGASVCLVVNLCVFPIWAGDALHASVVKNFEDLASSLEDCVSGYLKCVEYERIPSMILTFQAYDDPLYNAYRSVVESAGNEDTLLGFAVWEP PHGRFRKFSYPWRNYTKVSGALRHCAFMVMALHGCILSEIQAPAERRQVLAKELERVGIEGAKVLRKIGNKLNHMEKLGGGEAPLLDSNILNDIHEAADL LQNKIDRKSHLLLNPADQTSFPAISRQDSENVQTDLSENPDLQLGIKSLSEAVLDLRTIQLVKWPSRANSIYMESAGGGGDGSVRTYESASALSLATFAS LLIEFVARLQNVVDSYQELSEKAGFLEAKDVQDSCPVLERRRVGVCSWVFSCFGLLKRSSLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10034301 [exp]	0	1
AT1G11915			unknown protein		Lus10026760 [exp]	2.2	0.8860
AT3G14470			NB-ARC domain-containing disea...		Lus10004126 [exp]	2.8	0.9114
AT3G14470			NB-ARC domain-containing disea...		Lus10004127 [exp]	3.7	0.9107
AT5G67570		EMB246, DG1, EM...	EMBRYO DEFECTIVE 246, embryo d...		Lus10025202 [exp]	6.6	0.8727
AT2G21370		XK1, XK-1	XYLULOSE KINASE 1, xylulose ki...		Lus10017967 [exp]	6.9	0.8933
AT1G66930			Protein kinase superfamily pro...		Lus10026759 [exp]	7.3	0.8608
AT2G01870			unknown protein		Lus10030135 [exp]	7.5	0.8998
AT5G42750		BKI1	BRI1 kinase inhibitor 1 (.1)		Lus10021736 [exp]	11.8	0.8789
AT5G47860			Protein of unknown function (D...		Lus10024193 [exp]	17.0	0.8249
AT1G68010		ATHPR1, HPR	hydroxypyruvate reductase (.1....		Lus10019793 [exp]	18.0	0.8703

Compare expression of checked genes

Lus10034301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.