Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68590 170 / 1e-54 Ribosomal protein PSRP-3/Ycf65 (.1.2) AT5G15760 147 / 4e-45 Ribosomal protein PSRP-3/Ycf65 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041469 [exp] 286 / 7e-100 AT1G68590 175 / 2e-56 Ribosomal protein PSRP-3/Ycf65 (.1.2) Lus10035036 [exp] 199 / 1e-65 AT1G68590 181 / 9e-59 Ribosomal protein PSRP-3/Ycf65 (.1.2) Lus10021693 [exp] 195 / 5e-64 AT1G68590 178 / 9e-58 Ribosomal protein PSRP-3/Ycf65 (.1.2) Lus10033551 [exp] 119 / 5e-34 AT5G15760 115 / 3e-33 Ribosomal protein PSRP-3/Ycf65 (.1) Lus10017590 [exp] 118 / 5e-34 AT5G15760 116 / 3e-33 Ribosomal protein PSRP-3/Ycf65 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G127300 [exp] 196 / 1e-64 AT1G68590 188 / 2e-61 Ribosomal protein PSRP-3/Ycf65 (.1.2) Potri.008G118700 [exp] 184 / 1e-59 AT1G68590 187 / 4e-61 Ribosomal protein PSRP-3/Ycf65 (.1.2) Potri.004G101000 [exp] 134 / 4e-40 AT1G68590 136 / 3e-41 Ribosomal protein PSRP-3/Ycf65 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04839 [flax] [poplar] PSRP-3_Ycf65 Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
Representative CDS sequence Show only first row Show all	>Lus10034302 pacid=23176020 polypeptide=Lus10034302 locus=Lus10034302.g ID=Lus10034302.BGIv1.0 annot-version=v1.0 ATGTTGCCCGCTGCAATTCAATCCGGCGCCAATCCCTCTTTCCTTTCTTCTTCCCTCCTTTCTCCGAATACCACGACGTCCAAGCTCTCCGTTTCCGCTT TTCCAAAGCCATTCCTTCAACAAATACATTCTCCCACCCTTCTCAGCCGGAATTTCGGACAACCCGGTGGAAGAAATTGGCGGTTCACGCCCTTCGCTCC GGTAGAAGCAGTGACGACTCTGGAAGAAATAAATGTAGACGCAGACCAATGTTTTCCGGCGGAAAAGAACGAGGTGGTGGTGAAGCAAATGGAGAATCCT AGAGTGGTGCTGAAGTTCATATGGATGGAGAAGAACATTGGGTTGGGTATTGATCAGGTAATTCCTGGACAAGGCACGATTCCGTTGAGCCCTTACTTCT TTTGGCCAAGAAAAGATGCCTGGGAAGAGCTCAAGACTGCTCTAGAGAGCAAACCCTGGATTTCCCAGAAGAAGATGATCATACTTCTCAATCAGGCTAC TGACATCATCAACTTATGGCAGCAGAGTGGTGGCAATTTCACTGCTTAA
AA sequence Show only first row Show all	>Lus10034302 pacid=23176020 polypeptide=Lus10034302 locus=Lus10034302.g ID=Lus10034302.BGIv1.0 annot-version=v1.0 MLPAAIQSGANPSFLSSSLLSPNTTTSKLSVSAFPKPFLQQIHSPTLLSRNFGQPGGRNWRFTPFAPVEAVTTLEEINVDADQCFPAEKNEVVVKQMENP RVVLKFIWMEKNIGLGIDQVIPGQGTIPLSPYFFWPRKDAWEELKTALESKPWISQKKMIILLNQATDIINLWQQSGGNFTA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68590			Ribosomal protein PSRP-3/Ycf65...		Lus10034302 [exp]	0	1
AT5G11450		PPD5	PsbP domain protein 5, Mog1/Ps...		Lus10022110 [exp]	1.0	0.9849
AT1G68590			Ribosomal protein PSRP-3/Ycf65...		Lus10041469 [exp]	1.4	0.9845
AT1G50900		LTD, GDC1	LHCP translocation defect, Gra...		Lus10043055 [exp]	2.0	0.9828
AT3G14110		FLU	FLUORESCENT IN BLUE LIGHT, Tet...		Lus10015677 [exp]	2.4	0.9781
AT1G78630		EMB1473	embryo defective 1473, Ribosom...		Lus10041940 [exp]	3.0	0.9834
AT3G08920			Rhodanese/Cell cycle control p...		Lus10002485 [exp]	3.7	0.9746
AT1G05190		EMB2394	embryo defective 2394, Ribosom...		Lus10029120 [exp]	5.0	0.9822
AT4G09040			RNA-binding (RRM/RBD/RNP motif...		Lus10036468 [exp]	5.5	0.9641
AT1G56050			GTP-binding protein-related (....		Lus10031789 [exp]	5.7	0.9554
AT3G63190		HFP108, AtcpRRF...	"ribosome recycling factor, ch...		Lus10042587 [exp]	6.3	0.9720

Compare expression of checked genes

Lus10034302 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.