Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13340 226 / 8e-70 Regulator of Vps4 activity in the MVB pathway protein (.1) AT1G34220 157 / 4e-42 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT4G35730 149 / 7e-40 Regulator of Vps4 activity in the MVB pathway protein (.1) AT1G25420 144 / 2e-39 Regulator of Vps4 activity in the MVB pathway protein (.1.2.3) AT2G19710 149 / 7e-39 Regulator of Vps4 activity in the MVB pathway protein (.1) AT4G29440 143 / 1e-36 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT2G14830 122 / 2e-30 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT1G52315 98 / 3e-22 Regulator of Vps4 activity in the MVB pathway protein (.1) AT1G79910 97 / 5e-22 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT4G32350 86 / 1e-17 Regulator of Vps4 activity in the MVB pathway protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041468 [exp] 638 / 0 AT1G13340 239 / 1e-74 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10033552 [exp] 234 / 3e-73 AT1G13340 208 / 6e-64 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10017592 [exp] 208 / 3e-63 AT1G13340 178 / 3e-52 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10017591 [exp] 182 / 5e-55 AT1G13340 158 / 3e-46 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10006061 [exp] 162 / 1e-44 AT1G34220 417 / 2e-140 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10028724 [exp] 160 / 6e-44 AT1G34220 417 / 1e-140 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10041836 [exp] 158 / 2e-43 AT4G35730 423 / 2e-145 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10028383 [exp] 155 / 2e-42 AT4G35730 415 / 2e-142 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10000978 [exp] 159 / 8e-42 AT2G19710 308 / 6e-89 Regulator of Vps4 activity in the MVB pathway protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G127000 [exp] 300 / 6e-98 AT1G13340 268 / 1e-85 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.004G100900 [exp] 247 / 2e-75 AT1G13340 223 / 1e-66 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.017G113900 [exp] 236 / 4e-75 AT1G13340 211 / 9e-66 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.006G149800 [exp] 164 / 1e-43 AT2G19710 300 / 3e-86 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.019G087400 [exp] 160 / 2e-43 AT1G34220 357 / 5e-116 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.013G117100 [exp] 159 / 4e-43 AT1G34220 357 / 2e-115 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.008G121300 [exp] 152 / 2e-42 AT1G25420 361 / 3e-125 Regulator of Vps4 activity in the MVB pathway protein (.1.2.3) Potri.007G059800 [exp] 152 / 7e-41 AT4G35730 385 / 7e-130 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.013G135700 [exp] 108 / 5e-25 AT2G14830 228 / 2e-67 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.004G038600 [exp] 100 / 2e-22 AT2G14830 175 / 3e-48 Regulator of Vps4 activity in the MVB pathway protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03398 [flax] [poplar] Ist1 Regulator of Vps4 activity in the MVB pathway
Representative CDS sequence Show only first row Show all	>Lus10034303 pacid=23175993 polypeptide=Lus10034303 locus=Lus10034303.g ID=Lus10034303.BGIv1.0 annot-version=v1.0 ATGGGGAAGAAGCTGGACGCAATTCTAGGAAGGAACAACTTCAAGACTTACAAGTTCAAGGCACTCTCCAACCTCGCTGTCTCTCGCCTTGCCATCTTCA AGAACCAGCGTCAAGCTAAGCTCAACCATGCTCGTTCCGACGTCCTCGAGCTCCTCCGCCTCGGCCACCGTGACCGTGCCCTCCAACGGGCGGAGCATGT GATCAAGGAGCAGAACATGTTGGAGGTGTATGGCATGATGGAAGATTACTGCAACCTTCTTGTGGAGAGGGTTCATCTCCTCGAACAAGAAAGGGTATGC CCTGATGAACTGAAGGAGGCGATTTCGAGTTTGCTCTTTGCATCTTCCAGGTGCGGTGATTTTCCTGAGCTTCACGAGATGCGACTGGTGTTCACTTCGC GGTATGGTAAGGAGTTTGCTGCTAGCGCTGTTGAGTTGCGCAATAATTGTGGAGTCAATCGTAGGATGATGCAGAAGATGTCTACTAGGCAGCCTGACCT GGAGACCAGAACCAAACTGTTGAGAGAGATTGCAGCTCAGAACAATATTGCCTTTGAACTAGATGATGAACCTTCTCCTCCTTCTTTGACAACAGCAACC TCCAAGGAAAAGTTCAATGCTGACAGAAAGGAAGAAGAGGGAGAGTCATCGGTTGCAGCTGAAGAAATTGGGAGAGATGATGATCTCACTGACTCGGTGA GAGCGAGGAGGAAGTATAAGGATGTAGCTGACGCAGCTCAGGCAGCGTTCAAATCGGCTGCCTATGCAGCAGAAGCAGCGAGAGCTGCCGGTGAACTCTC TCGATCCGATCCTCGTCATCCTGGCAGCAGCAGCAGCCACCACAGTCCTAAAGATGATGATGGCAATGTTGTTAATGATTCTGATGATGGTAAGAGGCAG CTACTTAGCCAATATTATGATGACATGGATTCTGCATCTGAGGATGAGGAAGCGGATGTTGAGATCAAAGCTGGTTCGGAAGTGAAGTCGTCTTCTTCGA GCCTTGATCCTGAGAATCTGGCCAGAAAACTGGACAAGGATATCGAAATCAATTATAGTGATATTGAAGAGGATGACGATCATCAGAACACAAATGTAGC GAAATCTGATATGCATGGAAGCGGTGAGGGAACAGCAGCAAATGCCGATACCAGTGAGCAAATCCCCACGGTTATACAGTCTGGGGTGAAGGTGGAATCA GTAGACGTTGTATACCCGAATCTACAAGGCTCTAGAGAATCAAGAACTACACGCACCTTGAACATACTCAAGGCACCATTCTCTGTCAGGACCACCAGAC ACGTCCGTGGATACTGA
AA sequence Show only first row Show all	>Lus10034303 pacid=23175993 polypeptide=Lus10034303 locus=Lus10034303.g ID=Lus10034303.BGIv1.0 annot-version=v1.0 MGKKLDAILGRNNFKTYKFKALSNLAVSRLAIFKNQRQAKLNHARSDVLELLRLGHRDRALQRAEHVIKEQNMLEVYGMMEDYCNLLVERVHLLEQERVC PDELKEAISSLLFASSRCGDFPELHEMRLVFTSRYGKEFAASAVELRNNCGVNRRMMQKMSTRQPDLETRTKLLREIAAQNNIAFELDDEPSPPSLTTAT SKEKFNADRKEEEGESSVAAEEIGRDDDLTDSVRARRKYKDVADAAQAAFKSAAYAAEAARAAGELSRSDPRHPGSSSSHHSPKDDDGNVVNDSDDGKRQ LLSQYYDDMDSASEDEEADVEIKAGSEVKSSSSSLDPENLARKLDKDIEINYSDIEEDDDHQNTNVAKSDMHGSGEGTAANADTSEQIPTVIQSGVKVES VDVVYPNLQGSRESRTTRTLNILKAPFSVRTTRHVRGY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13340			Regulator of Vps4 activity in ...		Lus10034303 [exp]	0	1
AT1G13340			Regulator of Vps4 activity in ...		Lus10041468 [exp]	1.0	0.8486
AT1G52343			unknown protein		Lus10035888 [exp]	3.0	0.7647
AT2G34690		ACD11	ACCELERATED CELL DEATH 11, Gly...		Lus10023267 [exp]	3.2	0.7925
AT4G11600		LSC803, PHGPX, ...	glutathione peroxidase 6 (.1)		Lus10008022 [exp]	5.3	0.7855
AT1G75170			Sec14p-like phosphatidylinosit...		Lus10010804 [exp]	6.0	0.7532
AT3G29090		PME31, ATPME31	A. THALIANA PECTIN METHYLESTER...		Lus10026047 [exp]	6.3	0.7696
AT4G35230		BSK1	BR-signaling kinase 1 (.1)		Lus10003329 [exp]	6.7	0.7889
AT5G66320	GATA	GATA5	GATA transcription factor 5 (....		Lus10031096 [exp]	7.2	0.7517
AT3G51030		ATTRX1, ATTRXH1	ARABIDOPSIS THALIANA THIOREDOX...		Lus10024293 [exp]	8.4	0.7699
AT4G32790			Exostosin family protein (.1)		Lus10000608 [exp]	10.2	0.7817

Compare expression of checked genes

Lus10034303 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.