Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25860 429 / 3e-147 PLE2, LTA2 PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE, 2-oxoacid dehydrogenases acyltransferase family protein (.1) AT1G34430 362 / 4e-121 EMB3003 embryo defective 3003, 2-oxoacid dehydrogenases acyltransferase family protein (.1) AT1G54220 116 / 7e-28 Dihydrolipoamide acetyltransferase, long form protein (.1.2) AT3G13930 115 / 2e-27 Dihydrolipoamide acetyltransferase, long form protein (.1) AT3G52200 102 / 5e-23 LTA3 Dihydrolipoamide acetyltransferase, long form protein (.1.2) AT3G06850 84 / 4e-17 DIN3, LTA1, BCE2 DARK INDUCIBLE 3, 2-oxoacid dehydrogenases acyltransferase family protein (.1.2) AT4G26910 77 / 4e-15 Dihydrolipoamide succinyltransferase (.1.2.3) AT5G55070 77 / 6e-15 Dihydrolipoamide succinyltransferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041467 [exp] 587 / 0 AT3G25860 595 / 0.0 PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE, 2-oxoacid dehydrogenases acyltransferase family protein (.1) Lus10006069 [exp] 317 / 4e-107 AT1G34430 377 / 3e-131 embryo defective 3003, 2-oxoacid dehydrogenases acyltransferase family protein (.1) Lus10009432 [exp] 260 / 1e-85 AT1G34430 312 / 2e-106 embryo defective 3003, 2-oxoacid dehydrogenases acyltransferase family protein (.1) Lus10009433 [exp] 139 / 6e-38 AT1G34430 251 / 2e-81 embryo defective 3003, 2-oxoacid dehydrogenases acyltransferase family protein (.1) Lus10006877 [exp] 125 / 5e-31 AT1G54220 704 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) Lus10037617 [exp] 122 / 1e-29 AT1G54220 716 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) Lus10001967 [exp] 107 / 1e-24 AT3G52200 717 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) Lus10008412 [exp] 107 / 1e-24 AT3G52200 725 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) Lus10037492 [exp] 84 / 6e-17 AT3G06850 565 / 0.0 DARK INDUCIBLE 3, 2-oxoacid dehydrogenases acyltransferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G126600 [exp] 581 / 0 AT3G25860 470 / 2e-163 PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE, 2-oxoacid dehydrogenases acyltransferase family protein (.1) Potri.008G119500 [exp] 434 / 2e-149 AT3G25860 464 / 5e-161 PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE, 2-oxoacid dehydrogenases acyltransferase family protein (.1) Potri.013G114300 [exp] 367 / 4e-123 AT1G34430 549 / 0.0 embryo defective 3003, 2-oxoacid dehydrogenases acyltransferase family protein (.1) Potri.019G084900 [exp] 362 / 3e-121 AT1G34430 473 / 7e-165 embryo defective 3003, 2-oxoacid dehydrogenases acyltransferase family protein (.1) Potri.001G198000 [exp] 117 / 3e-28 AT3G13930 724 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1) Potri.003G043900 [exp] 114 / 7e-27 AT3G13930 771 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1) Potri.008G027400 [exp] 109 / 3e-25 AT3G52200 754 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) Potri.008G219700 [exp] 86 / 9e-18 AT3G06850 518 / 0.0 DARK INDUCIBLE 3, 2-oxoacid dehydrogenases acyltransferase family protein (.1.2) Potri.010G011300 [exp] 82 / 2e-16 AT3G06850 566 / 0.0 DARK INDUCIBLE 3, 2-oxoacid dehydrogenases acyltransferase family protein (.1.2) Potri.014G154700 [exp] 76 / 1e-14 AT4G26910 520 / 0.0 Dihydrolipoamide succinyltransferase (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0105 [flax] [poplar] Hybrid PF00364 [flax] [poplar] Biotin_lipoyl Biotin-requiring enzyme CL0149 [flax] [poplar] CoA-acyltrans PF00198 [flax] [poplar] 2-oxoacid_dh 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CL0149 [flax] [poplar] PF02817 [flax] [poplar] E3_binding e3 binding domain
Representative CDS sequence Show only first row Show all	>Lus10034304 pacid=23176069 polypeptide=Lus10034304 locus=Lus10034304.g ID=Lus10034304.BGIv1.0 annot-version=v1.0 ATGGCCTCCGCCTCTTCTCCATTCCTCACCAAGATCCCAGCCTCCAACAGAACCATTTCCTTCTCCTCCTCCACCTTCCTCCCCTCTCGCTTCCCTTCCT CCTCCATTTCTCAATGTCGCCACCGCTGCCGCAATGCTCTCAAGGTCCAGGCCAAGATTCGGGAGATCTTCATGCCGGCGCTCAGCTCCACCATGACGGA AGGCAAGATCGTCTCCTGGATTAAATCCGAGGGCGACGTTCTCTCCAAAGGCGAGAGCGTCGTAGTTGTCGAGTCCGATAAGGCTGACATGGATGTGGAG ACGTTTTACGACGGCATCCTTGCCGCAATCGTCGTGCCAGAAGGAGAGTCCGCCCCCGTTGGTGCTCCAATTGGACTCTTAGCCGAGACCGAAGCTGACA TCGCTGAAGCTAAAGCTAAAGCTGCTGCTGCTTCTGGTGGTGGTAGTTCTGCTACTGCTTCTGCCCCTACTCCTGCTGCTGCTCCGGCTGCTTCGCCGAT TCCTCCGGTTGCTGCTGCTTCCCCTCCTCCTCCTCCGGCTGCGGATGGGCGGAGGAAGATTGTCCTCACGCCTTACGCAAAGAAATTGGCGAAGCAAAAT AAAGTGGATATCAGTAAGGTGGTTGGAACTGGGCCGTATGGGAGGATTACTCCAGGAGATATTGAAGCTGCTGCAGGAATTGTGCCTAAGCAAAGTGTCG CAGCTCCTGCTGCTGCACAGTCAGCTCCGGCTGCCGCTCCTGCCAAAGCTGCACCGGCGGCTCCTTCAACTCCTGCATTGCCTGGTTCTACAGTAGTACC GTTTACAGGGATGCAATCCGCGGTATCCAAGAACATGTTGGAGAGTCTTTCGGTGCCTACTTTCCGAGTTGGATATCCGATCACAACGGATGCTCTTGAT GCCTTATATTTGAAGGTGAAAGCAAAGGGTGTGACCATGACTGCGTTATTGGCAAAGGCTGCAGCAATGGCCCTTGCCCAGCACCCAGTTGTTAATGCCA GCTGCAAAGATGGAAAGAGTTTTACTTACAACAGTAACATTAACATTGCTGTGGCAGTGGCTATCAATGGCGGGTTGATAACTCCTGTTCTTCAGGATGC TGATAAGCTGGACCTTTATCTATTGTCACAAAAGTGGAAAGAGTTGGTCGAGAAGGCCCGAGCTAAGCAACTCCAGCCTCAAGAGTACAATTCAGGGACT TTCACTCTATCCAATCTGGGAATGTTTGGAGTGGATAGATTTGATGCTATTCTGCCCCCTGGCCAAGGTGCAATCATGGCTGTTGGAGCCTCAAAGCCTA CTGTAATTGCTGATGCAGAGGGGTTCCTCAGTGTGAAAAACAAAATGCAGGTGAACGTAACAGCGGATCATCGGATTGTCTACGGTGCTGACTTGGCTGC CTTCCTCCAGACTTTCTAA
AA sequence Show only first row Show all	>Lus10034304 pacid=23176069 polypeptide=Lus10034304 locus=Lus10034304.g ID=Lus10034304.BGIv1.0 annot-version=v1.0 MASASSPFLTKIPASNRTISFSSSTFLPSRFPSSSISQCRHRCRNALKVQAKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVE TFYDGILAAIVVPEGESAPVGAPIGLLAETEADIAEAKAKAAAASGGGSSATASAPTPAAAPAASPIPPVAAASPPPPPAADGRRKIVLTPYAKKLAKQN KVDISKVVGTGPYGRITPGDIEAAAGIVPKQSVAAPAAAQSAPAAAPAKAAPAAPSTPALPGSTVVPFTGMQSAVSKNMLESLSVPTFRVGYPITTDALD ALYLKVKAKGVTMTALLAKAAAMALAQHPVVNASCKDGKSFTYNSNINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARAKQLQPQEYNSGT FTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVIADAEGFLSVKNKMQVNVTADHRIVYGADLAAFLQTF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25860		PLE2, LTA2	PLASTID E2 SUBUNIT OF PYRUVATE...		Lus10034304 [exp]	0	1
AT3G47520		pNAD-MDH, MDH	plastidic NAD-dependent malate...		Lus10019096 [exp]	1.0	0.9680
AT5G10160			Thioesterase superfamily prote...		Lus10015830 [exp]	2.4	0.9654
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Lus10042899 [exp]	2.8	0.9565
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10038008 [exp]	3.5	0.9454
AT4G01220		MGP4	male gametophyte defective 4, ...		Lus10002153 [exp]	4.0	0.9438
AT3G19820		CBB1, EVE1, DW1...	ENHANCED VERY-LOW-FLUENCE RESP...		Lus10017413 [exp]	4.2	0.9494
AT1G78900		VHA-A	vacuolar ATP synthase subunit ...		Lus10034836 [exp]	4.5	0.9487
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Lus10017534 [exp]	4.9	0.9502
AT3G56130			biotin/lipoyl attachment domai...		Lus10009843 [exp]	4.9	0.9576
AT1G56340		AtCRT1a, CRT1	calreticulin 1a (.1.2)		Lus10010924 [exp]	5.5	0.9537

Compare expression of checked genes

Lus10034304 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.