Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68570 541 / 0 Major facilitator superfamily protein (.1) AT3G54450 305 / 2e-94 Major facilitator superfamily protein (.1) AT5G01180 302 / 3e-93 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT4G39670 286 / 6e-92 Glycolipid transfer protein (GLTP) family protein (.1) AT3G54140 294 / 4e-90 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT2G02020 290 / 4e-89 AtPTR4 peptide transporter 4, Major facilitator superfamily protein (.1.2) AT2G02040 282 / 1e-85 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT1G62200 279 / 2e-84 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT1G69870 278 / 1e-83 NRT1.7 nitrate transporter 1.7 (.1) AT2G26690 252 / 2e-74 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041466 [exp] 731 / 0 AT1G68570 850 / 0.0 Major facilitator superfamily protein (.1) Lus10017817 [exp] 382 / 3e-123 AT1G68570 637 / 0.0 Major facilitator superfamily protein (.1) Lus10018838 [exp] 377 / 2e-122 AT1G68570 571 / 0.0 Major facilitator superfamily protein (.1) Lus10035024 [exp] 322 / 5e-105 AT4G39670 305 / 4e-105 Glycolipid transfer protein (GLTP) family protein (.1) Lus10035516 [exp] 308 / 2e-95 AT5G01180 913 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10032252 [exp] 299 / 5e-92 AT1G12110 771 / 0.0 CHLORINA 1, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1, nitrate transporter 1.1 (.1) Lus10024614 [exp] 290 / 1e-88 AT1G12110 737 / 0.0 CHLORINA 1, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1, nitrate transporter 1.1 (.1) Lus10021132 [exp] 290 / 2e-88 AT3G54140 814 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Lus10018207 [exp] 286 / 1e-85 AT5G01180 818 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G126300 [exp] 583 / 0 AT1G68570 901 / 0.0 Major facilitator superfamily protein (.1) Potri.006G034000 [exp] 414 / 2e-135 AT1G68570 656 / 0.0 Major facilitator superfamily protein (.1) Potri.006G033900 [exp] 402 / 3e-131 AT1G68570 607 / 0.0 Major facilitator superfamily protein (.1) Potri.016G032000 [exp] 399 / 2e-130 AT1G68570 590 / 0.0 Major facilitator superfamily protein (.1) Potri.016G111800 [exp] 320 / 6e-100 AT3G54140 893 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.006G096800 [exp] 313 / 1e-97 AT3G54140 896 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.008G119600 [exp] 302 / 1e-97 AT4G39670 307 / 1e-106 Glycolipid transfer protein (GLTP) family protein (.1) Potri.001G248600 [exp] 294 / 4e-90 AT3G54140 834 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.009G042400 [exp] 286 / 3e-87 AT3G54140 832 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.010G100200 [exp] 286 / 6e-87 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08718 [flax] [poplar] GLTP Glycolipid transfer protein (GLTP) CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10034305 pacid=23175965 polypeptide=Lus10034305 locus=Lus10034305.g ID=Lus10034305.BGIv1.0 annot-version=v1.0 ATGACCACGACGACGACCAGAAAAAGGAAGCAGGGCGGCATGATTACAATGCCCTTCATTTTTGCAAATGAAGCAACAGAGAAGCTAGCCGTGGTTGGAT TCAACACAAACATGATAAGCTACTTAACCACACAGCTCCACATGCCCATCACCAAAGCCGCCAACACTCTTACCAACTTCGGCGGCACCGCCAGCCTCAC CCCTTTACTCGGCGCCTTCCTCGCCGACTCTTACGCCGGCCGCTTCTGGAGCATAGTTCTCGCCTCAATCATCTACCAATTCGGAATGGCCGGATTGACC CTGTCGGCGGTACTCCCTCACCTGCGCCCGCCGCCGTGCAAAGCGGACGATGTCTGCCAGCAAGCCGACGCGGGACAGCTGGCGATCCTGTACGTGTCCT TACTCCTGGGGGGGCTTGGGGCGGGCGGGATCCGGCCCTGCGTCGGGTACCCGATGTACCGGAGGCTGGAGCCAGTGGGTAGCCCGTTTACCCGGCTGGT GCAGGTGATGGTGGCGGCGTGGCGGAAGAGGAAAGTTGAGATGGTTTCGGATCCGAGAGAGCTGTATCAGAACGAGGAGATGGACGGCCCGATTTCGTTG GGTGGGAGGCTCCTTCACACCAAGAATATGAAGTTCTTAGATAAGGCTGCAATCGTGATGGCGGACGACCAACAAACCACACCAAACTTATGGAGACTAA ACACAGTCCATAGAGTCGAAGAACTCAAATCCTTAATCCGAATGGGCCCGATATGGGCCGCGGGGATCCTCCTCATCACAGCCTACGCGCAACAAAGCAC GTTCTCCCTCCAGCAAGCCAAATCAATGGACCGGCACCTCACGCCCAAGTTCCAAATCCCGGCCGGCTCAATGTCGGTATTCACCATGACGTCAATGCTC ACCACCATCATAATCTACGACCGCATTTTCGTGCCCCTCGTCCGCCGCCTGACCGGCCTCGATCGGGGGATCACGTTCCTACACCGCATGGGGATAGGAT TCGTGATCTCCATCATGGCCACGTTTGTGGCAGGGTTCATGGAGGTCAAGCGCAAGGAAGTGGCGCATGAGCACGGTCTGCTCGATTTCGGGCACAAGAC GGTGCCCATTTCGGTTTTCTGGCTGGCCCCGCAGTATTGTTTGCACGGGGTGGCGGAGGCGTTCATGTCGATAGGGCATTTGGAGTTTTTCTATGACCAG GCGCCGGAGAGCATGAGGAGTACGGCGATGGCGCTGTTCTGGACGGTGATATCGGTGGGGAATTACATGAGTACCCTTTTGGTTACGTTGATCCACAAGT TTAGTGCCGGGTCGGACGGGTCGAACTGGCTGCCCGATCAGAATTTGAATAAGGGGAGGTTGGAGTATTTTTATTGGCTGATAACGGTGTTGCAAGTGGT GAACTTCGTGTACTACTTGTTTTGTGCTAAGTTGTATACTTATAAGCCGATTCATGTGGAGGCGCCGCCGAAAGGAGAGGAGGAGAGTGGTGGAGTTGAG CTTGCAGCTAATAAGATCCCAGAAACAACTATGCAACAGCTGAAGGACACCACGAGTCTATACAACCACGACTCAATGACGACGCAATCGCAGACGCCCT TGTCCGAGGTGGCCGACGCGTTCGAGGAGCTCGCGCGCCGTTTGAGGCGGGAGAGGAGGATCGTCAACGGAGAAGGCGAATTAGGTTTCGTCGAAGATGA ACAAGAAGATGGAGAAGAAGATGCAGATCTTCGATTGGATTTCTTTTGCGAGGCGTGCTCTTTGGTTCCCGTTCTCTTCAGCTGCCTCGGCCTCGCTTTC AAATTCGCAGAGTCGGAGTACGTGGCGAAAGTGCGTGATCTGGCGGAAGCGTCCAAGAGGTTTGAGAGTCTGCACAATGTGGTTGATTTGGATGTCGCTA ACGGGACGGTGAGGACTGCGGGCAGCCATACCAGAAACTTGCGCCGGGTTAGGCAGGGTCTTGATCTCATCAGGGGAATCTTCCAGCAGTTCCTCGCTAA TAACGATCACTCGTTGAAGGATGCTGCAACCACCGCCTACTCCCAAATCTGCGCTCCTTTCCATACCTGGGCGGTTAGGACCGCTGTTTACGCAGGAATG TACACGCTCCCCACGAGAGACCAGCTTCTGATGAGGCTGCAAGAAACTGATGAATCAGCGGAGAAGAAGATGACGAGGTACATACAAGCTTCCCTTCCGG TGATCCAGCACATTGACCGGCTTTACACTTCCAGGAACATCACCTTAGATTGGTAA
AA sequence Show only first row Show all	>Lus10034305 pacid=23175965 polypeptide=Lus10034305 locus=Lus10034305.g ID=Lus10034305.BGIv1.0 annot-version=v1.0 MTTTTTRKRKQGGMITMPFIFANEATEKLAVVGFNTNMISYLTTQLHMPITKAANTLTNFGGTASLTPLLGAFLADSYAGRFWSIVLASIIYQFGMAGLT LSAVLPHLRPPPCKADDVCQQADAGQLAILYVSLLLGGLGAGGIRPCVGYPMYRRLEPVGSPFTRLVQVMVAAWRKRKVEMVSDPRELYQNEEMDGPISL GGRLLHTKNMKFLDKAAIVMADDQQTTPNLWRLNTVHRVEELKSLIRMGPIWAAGILLITAYAQQSTFSLQQAKSMDRHLTPKFQIPAGSMSVFTMTSML TTIIIYDRIFVPLVRRLTGLDRGITFLHRMGIGFVISIMATFVAGFMEVKRKEVAHEHGLLDFGHKTVPISVFWLAPQYCLHGVAEAFMSIGHLEFFYDQ APESMRSTAMALFWTVISVGNYMSTLLVTLIHKFSAGSDGSNWLPDQNLNKGRLEYFYWLITVLQVVNFVYYLFCAKLYTYKPIHVEAPPKGEEESGGVE LAANKIPETTMQQLKDTTSLYNHDSMTTQSQTPLSEVADAFEELARRLRRERRIVNGEGELGFVEDEQEDGEEDADLRLDFFCEACSLVPVLFSCLGLAF KFAESEYVAKVRDLAEASKRFESLHNVVDLDVANGTVRTAGSHTRNLRRVRQGLDLIRGIFQQFLANNDHSLKDAATTAYSQICAPFHTWAVRTAVYAGM YTLPTRDQLLMRLQETDESAEKKMTRYIQASLPVIQHIDRLYTSRNITLDW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68570			Major facilitator superfamily ...		Lus10034305 [exp]	0	1
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10014407 [exp]	3.0	0.9040
AT4G30190		PMA2, AHA2	PLASMA MEMBRANE PROTON ATPASE ...		Lus10007948 [exp]	4.2	0.8930
AT2G24580			FAD-dependent oxidoreductase f...		Lus10042437 [exp]	5.2	0.8759
AT2G26690			Major facilitator superfamily ...		Lus10018553 [exp]	6.0	0.8877
AT4G03230			S-locus lectin protein kinase ...		Lus10031592 [exp]	6.5	0.8869
AT3G43660			Vacuolar iron transporter (VIT...		Lus10025685 [exp]	6.7	0.8878
AT2G26690			Major facilitator superfamily ...		Lus10039782 [exp]	6.9	0.8831
AT3G15810			Protein of unknown function (D...		Lus10032602 [exp]	7.4	0.8876
AT3G07360		ATPUB9	ARABIDOPSIS THALIANA PLANT U-B...		Lus10025885 [exp]	8.1	0.8704
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10011058 [exp]	8.5	0.8874

Compare expression of checked genes

Lus10034305 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.