Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34890 2085 / 0 ATXDH1 xanthine dehydrogenase 1 (.1) AT4G34900 2019 / 0 ATXDH2 A. THALIANA XANTHINE DEHYDROGENASE 2, xanthine dehydrogenase 2 (.1) AT3G43600 513 / 6e-159 AtAO3, atAO-2, AOgamma, AO3, AAO2 Arabidopsis thaliana aldehyde oxidase 3, Arabidopsis thaliana aldehyde oxidase 2, Aldehyde oxidase gamma, aldehyde oxidase 3, aldehyde oxidase 2 (.1) AT2G27150 503 / 5e-155 AtAAO3, At-AO3, AOdelta, AAO3 Arabidopsis thaliana aldehyde oxidase 3, Aldehyde oxidase delta, abscisic aldehyde oxidase 3 (.1.2) AT5G20960 503 / 9e-155 AT-AO1, AOalpha, ATAO1, ATAO, AAO1 ARABIDOPSIS THALIANA ALDEHYDE OXIDASE 1, aldehyde oxidase alpha, aldehyde oxidase 1 (.1.2) AT1G04580 487 / 4e-149 ATAO-4, ATAO2, AAO4 ALDEHYDE OXIDASE 2, arabdopsis thaliana aldehyde oxidase 4, aldehyde oxidase 4 (.1) AT4G37500 112 / 7e-29 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding protein (.1) AT3G04390 79 / 2e-17 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding protein (.1) AT4G31196 49 / 3e-07 oxidoreductases (.1) AT4G02180 51 / 8e-06 DC1 domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019386 [exp] 506 / 8e-156 AT3G43600 1635 / 0.0 Arabidopsis thaliana aldehyde oxidase 3, Arabidopsis thaliana aldehyde oxidase 2, Aldehyde oxidase gamma, aldehyde oxidase 3, aldehyde oxidase 2 (.1) Lus10008429 [exp] 483 / 2e-147 AT3G43600 1652 / 0.0 Arabidopsis thaliana aldehyde oxidase 3, Arabidopsis thaliana aldehyde oxidase 2, Aldehyde oxidase gamma, aldehyde oxidase 3, aldehyde oxidase 2 (.1) Lus10040474 [exp] 481 / 5e-147 AT3G43600 1555 / 0.0 Arabidopsis thaliana aldehyde oxidase 3, Arabidopsis thaliana aldehyde oxidase 2, Aldehyde oxidase gamma, aldehyde oxidase 3, aldehyde oxidase 2 (.1) Lus10013393 [exp] 481 / 1e-146 AT3G43600 1657 / 0.0 Arabidopsis thaliana aldehyde oxidase 3, Arabidopsis thaliana aldehyde oxidase 2, Aldehyde oxidase gamma, aldehyde oxidase 3, aldehyde oxidase 2 (.1) Lus10011279 [exp] 400 / 6e-117 AT5G20960 1315 / 0.0 ARABIDOPSIS THALIANA ALDEHYDE OXIDASE 1, aldehyde oxidase alpha, aldehyde oxidase 1 (.1.2) Lus10041463 [exp] 163 / 2e-46 AT4G34890 122 / 4e-33 xanthine dehydrogenase 1 (.1) Lus10023586 [exp] 82 / 1e-17 AT3G43600 209 / 5e-63 Arabidopsis thaliana aldehyde oxidase 3, Arabidopsis thaliana aldehyde oxidase 2, Aldehyde oxidase gamma, aldehyde oxidase 3, aldehyde oxidase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G054600 [exp] 2264 / 0 AT4G34890 2077 / 0.0 xanthine dehydrogenase 1 (.1) Potri.004G191300 [exp] 499 / 7e-153 AT2G27150 1678 / 0.0 Arabidopsis thaliana aldehyde oxidase 3, Aldehyde oxidase delta, abscisic aldehyde oxidase 3 (.1.2) Potri.009G153600 [exp] 489 / 2e-149 AT3G43600 1741 / 0.0 Arabidopsis thaliana aldehyde oxidase 3, Arabidopsis thaliana aldehyde oxidase 2, Aldehyde oxidase gamma, aldehyde oxidase 3, aldehyde oxidase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02738 [flax] [poplar] Ald_Xan_dh_C2 Molybdopterin-binding domain of aldehyde dehydrogenase PF01315 [flax] [poplar] Ald_Xan_dh_C Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CL0233 [flax] [poplar] SufE_NifU PF03450 [flax] [poplar] CO_deh_flav_C CO dehydrogenase flavoprotein C-terminal domain CL0486 [flax] [poplar] Fer2 PF01799 [flax] [poplar] Fer2_2 [2Fe-2S] binding domain CL0077 [flax] [poplar] FAD_PCMH PF00941 [flax] [poplar] FAD_binding_5 FAD binding domain in molybdopterin dehydrogenase CL0486 [flax] [poplar] Fer2 PF00111 [flax] [poplar] Fer2 2Fe-2S iron-sulfur cluster binding domain
Representative CDS sequence Show only first row Show all	>Lus10034306 pacid=23176053 polypeptide=Lus10034306 locus=Lus10034306.g ID=Lus10034306.BGIv1.0 annot-version=v1.0 ATGGGATCCCTGAAGAACAAAGATGAAGTCGAACTGGCTGGAGATGAATCAGCTCCCAAAGATGGGATTCTTTACGTTAATGGAGTTCGTAAGGTTTTGC CCGATGGCTTAGCTCACTTGACCCTTCTTGAGTATCTCAGAGATATTGGGCAGACTGGGACAAAGCTGGGATGTGGTGAAGGTGGTTGTGGTGCTTGCAC TGTTATGGTTTCCCAATATGATATCAGGACAAAGACATGTCTCCACCGTGCTGTCAATGCCTGCTTGGCACCTCTGTATTCCGTTGAGGGAATGCATGTA ATAACCGTCGAGGGAGTTGGTACTCGAAGAAGTGGGTTGCACCCGGTTCAGGAATCATTGGCAAGTGCTCATGGTTCACAATGTGGATTTTGCACGCCTG GATTTGTAATGTCGATGTATGCCCTATTAAGGTCGAGTCGAGAGCCTCCTACCGAGGAGCAAATCGAAGAATCCCTTGCTGGAAATTTGTGCCGTTGCAC TGGTTACAGACCTATTGTTGATGCGTTCCGAGTCTTTGCAAAGACGGATGATGCATTGTACACTGAAGCGAATAGTAAAGAAGGTGAATTTGTGTGCCCT TCAACCGGTAAACCGTGTTCATGCAAAAAAAATAGTTCACCAGTCGATAATACAGCTTGTGGTGAGAGGTATAGTATTGCATCTTATAGTGAAGTAGATG GGAGCAAGTACATTGAGAAAGAGCTAATCTTTCCTCCTGAGCTCTTAATGAGGAAACTAACTCCCTTGAATCTGAATGGCTTCAATGGGCTGAAATGGTT TCGGCCTGTAAGACTTCAGCATGTCCTGGACTTAAAAGCTGAGCACCCAGATGCAAAGTTGGTGATCGGTAATAGTGAGGTCGGGATAGAGATGAGGCTA AAGAGACTCCAGTATCAGACTTTGATCCATGTGGGTCATGTACCTGAACTTAACGTCTTGAACGTTAAGGAAGATGGTATAGAGATAGGTGCAGCTGTAA GATTGACTGATCTCATGCAACTTCTTAGAAAGGTTGCAAATGAGCGTGTTGGTCACACAACATCATCTTGTAAGGCCATTGTTGAACAGTTGAAGTGGTT TGCAGGAACTCAAATAAAGAATGTTGCATCTGTTGGAGGCAACATTTGCACAGCCAGTCCAATATCTGATTTAAACCCACTCTGGATGGCTGCAAGGGCT AAGTTTCGAATTATTGACTTAAAGGGAAGCATTAGAACTACACAGGCAGATAAGTTCTTCCTGGGTTACAGGAAGGTGGATCTTCAGAATGGCGAGATCT TACTCTCGGTATTCTTACCATGGACGATGAAGTTTGAGTATGTGAAGGAATTTAAGCAGGCTCATCGTAGGGACGATGACATTGCAATAGTGAATGCTGG AATGCGTGTTTCTCTTGAAAAGAAGGGTGAAGAATGGGTTGTCTTAGATGCATCAATTGCTTATGGTGGCGTGGCTCCCCTTTCTTTGTCTGCTGTCAAA GCCAGTGGCTTCCTTGTTGGGAAGAGCTGGCATCAGGAGCTGTTCTTGGGTGCTTTACAGGCCTTAGAGACCGATATTGTGATCAAGGAAGATGCTCCTG GTGGTATGGTAGAATTCAGGAAATCGTTGACTCGCAGTTTCTTGTTCAAGTTTTTCCTTTGGGTTTCACATCAAATGGAAGGAGATCAATGTGGTGGGAT AAGTGTACCATTGTCACATCTTTCAGCTGTACAATCCTTCTCTCGACCTTCAGTCATGGGAAGCCAAGATTATGAGATTAGGAAACACGGGACCTCTGTG GGATCGCCAGAGATTCATCTATCTGCAAGACTTCAGGTCACAGGGGAAGCAGAGTATGCAGATGATGCTCCGATGCCACCGAATGGTTTGCATGCTGCTC TTGTATTGAGCCGAAAACCTCATGCTCGGATTGTTGCAATCGATGATTCGGAAGCCAAGTCTTCACCTGGTTTCGCAGGCGCGTTCTTTGCCAAGGATGT ACCGGGTGACAATCACATTGGAGCAATTGTACACGACGAGGAAGTATATGCTACGGAGTTCGTTACCTGTGTTGGTCAGGTTATCGGGGTGGTTGTTGCT GATACGCATGAGAATGCAAAGTTAGCTGCGAGAAAAGTTCATGTTGAGTACAAAGAGCTCCCTGCAATATTGACCATACAAGAAGCTGTAAATGCTGGAA GTTTCCATCCTCACACGGAGAAATGGTTGAAAAGTGGAGATGTGGATGCTTGTTTTGGATCGGGCAAATGTGACAAGATCGTCGAAGGAGAGGTATGCAT AGGGGGACAGGAACACTTCTACTTGGAACCACAAAGCAGCTACGTTTGGACGTTGGATAGTGGCAATGAAGTTCACATGATTTCGTCGACACAAGCTCCT CAAAAGCACCAGAAGTATGTGTCCCACGTGCTTGGTATTCCGATGTCGAAAGTAGTATGCAAAACGAAACGAATAGGTGGTGGATTCGGTGGGAAGGAGA CTCGGTCAGCTTTCCTTGCTGCAGCTGCTTGTGTACCATCTTATCTATTGAATCGTCCTGTGAAGATCACACTAGATCGAGATGTGGACATGATGATAAC AGGGCAACGTCACAGCTTTCTTGGGAAATACAAGGTTGGCTTCACAAATGAGGGGAAAATTCTTGCACTGGATCTCAAGATCTATAACAATGCTGGAAAC TCTCTAGACCTTTCGCTTGCTATACTCGAACGAGCGATGTTCCATTCTGACAATGTTTACGAAATTCCAAACGTTCGAATAGTAGGAAATGTTTGCTTGA CTAATCTTCCGAGTAATACTGCCTTCCGCGGATTTGGAGGTCCCCAAGGTATGCTTATAACTGAGAATTGGATCCAGAGAGTTGCTGTAGAAGTTAACAA ATCCCCAGAAGAGATACGGGAGATGAATTTTCAAGGTGAAGGAACAATACTGCATTACGGTCAGCAACTACAGCACTGTACACTATCCCCACTGTGGAGT GAACTGAAGTTGTCTTCCGACTTCTTGAAGGCCCGTGAAGATGTTCATCACTTCAACCGTCATAACCGGTGGAAGAAGCGTGGATTGGCTATGGTTCCAA CGAAATTCGGGATATCTTTTACTTCGAAGTTTATGAACCAAGCTGGCGCGCTTGTGAATGTCTACACGGATGGAACTGTTTTGGTTACACATGGCGGTGT AGAAATGGGTCAAGGTTTGCATACCAAGGTCGCTCAAGTTGCTGCTTCGGCCTTCGATATTCCTCTGAGTTCTGTGTTCATTTCTGAGACCAGTACTGAC AAGGTACCGAACTCATCCCCTACTGCAGCTTCGGCAAGCTCGGATATGTACGGAGCAGCAGTTCTGGATGCTTGTGAGCAGATCAAAGCCCGAATGGAAC CTGTTGCTTGTAAACATAGCTTCACCTCTTTCGCTGAGTTGGCGGGTGCTTGCTATGCTCAAAGAATAGACCTTTCTGCTCATGGATTCTACATTACACC CGATATTGGGTTTGACTGGACGACTGGTCAAGGGAACCCCTTTCGTTACTTCACGTATGGTGCTGCATTCGCGGAGGTCGAGATCGACACTCTTACCGGA GATTTCCATACGAGGAATGTGAATGTTGTTATGGACCTTGGCTATTCTCTCAATCCAGCCATTGATGTCGGACAGATCGAAGGAGCATTCGTGCAAGGAC TGGGATGGGTAGCGTTAGAAGAACTGAAATGGGGAGATGAAGCACATAAGTGGATCGCACCGGGTTGCTTGTACACTTGTGGCCCTGGAAGTTACAAGAT CCCTTCTTTGAATGATGTCCCATTCAAGTTCAATGTGTCACTTCTCAAGGGCCATCCGAATGTGAAGGCAATCCATTCATCGAAAGCAGTAGGCGAGCCG CCGTTCTTCTTGGCTTCAGCAGTGTTCTTCGCAATCAAAGATGCAATCAAAGCTGCAAGAGCCGAAGTTGGGCATCACGAGTGGTTTCCTCTGGATAATC CAGCAACACCGGAGAGGATCAGGATGGCTTGCCTAGATGAGCTCACGGAACCGCTCGTGGCCTCCGATTTTCGTCCTAAGCTTAGTGTCTAA
AA sequence Show only first row Show all	>Lus10034306 pacid=23176053 polypeptide=Lus10034306 locus=Lus10034306.g ID=Lus10034306.BGIv1.0 annot-version=v1.0 MGSLKNKDEVELAGDESAPKDGILYVNGVRKVLPDGLAHLTLLEYLRDIGQTGTKLGCGEGGCGACTVMVSQYDIRTKTCLHRAVNACLAPLYSVEGMHV ITVEGVGTRRSGLHPVQESLASAHGSQCGFCTPGFVMSMYALLRSSREPPTEEQIEESLAGNLCRCTGYRPIVDAFRVFAKTDDALYTEANSKEGEFVCP STGKPCSCKKNSSPVDNTACGERYSIASYSEVDGSKYIEKELIFPPELLMRKLTPLNLNGFNGLKWFRPVRLQHVLDLKAEHPDAKLVIGNSEVGIEMRL KRLQYQTLIHVGHVPELNVLNVKEDGIEIGAAVRLTDLMQLLRKVANERVGHTTSSCKAIVEQLKWFAGTQIKNVASVGGNICTASPISDLNPLWMAARA KFRIIDLKGSIRTTQADKFFLGYRKVDLQNGEILLSVFLPWTMKFEYVKEFKQAHRRDDDIAIVNAGMRVSLEKKGEEWVVLDASIAYGGVAPLSLSAVK ASGFLVGKSWHQELFLGALQALETDIVIKEDAPGGMVEFRKSLTRSFLFKFFLWVSHQMEGDQCGGISVPLSHLSAVQSFSRPSVMGSQDYEIRKHGTSV GSPEIHLSARLQVTGEAEYADDAPMPPNGLHAALVLSRKPHARIVAIDDSEAKSSPGFAGAFFAKDVPGDNHIGAIVHDEEVYATEFVTCVGQVIGVVVA DTHENAKLAARKVHVEYKELPAILTIQEAVNAGSFHPHTEKWLKSGDVDACFGSGKCDKIVEGEVCIGGQEHFYLEPQSSYVWTLDSGNEVHMISSTQAP QKHQKYVSHVLGIPMSKVVCKTKRIGGGFGGKETRSAFLAAAACVPSYLLNRPVKITLDRDVDMMITGQRHSFLGKYKVGFTNEGKILALDLKIYNNAGN SLDLSLAILERAMFHSDNVYEIPNVRIVGNVCLTNLPSNTAFRGFGGPQGMLITENWIQRVAVEVNKSPEEIREMNFQGEGTILHYGQQLQHCTLSPLWS ELKLSSDFLKAREDVHHFNRHNRWKKRGLAMVPTKFGISFTSKFMNQAGALVNVYTDGTVLVTHGGVEMGQGLHTKVAQVAASAFDIPLSSVFISETSTD KVPNSSPTAASASSDMYGAAVLDACEQIKARMEPVACKHSFTSFAELAGACYAQRIDLSAHGFYITPDIGFDWTTGQGNPFRYFTYGAAFAEVEIDTLTG DFHTRNVNVVMDLGYSLNPAIDVGQIEGAFVQGLGWVALEELKWGDEAHKWIAPGCLYTCGPGSYKIPSLNDVPFKFNVSLLKGHPNVKAIHSSKAVGEP PFFLASAVFFAIKDAIKAARAEVGHHEWFPLDNPATPERIRMACLDELTEPLVASDFRPKLSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34890		ATXDH1	xanthine dehydrogenase 1 (.1)		Lus10034306 [exp]	0	1
AT4G33150		LKR/SDH, SDH	lysine-ketoglutarate reductase...		Lus10038086 [exp]	1.0	0.9814
AT5G65790	MYB	AtMYB68	myb domain protein 68 (.1)		Lus10028248 [exp]	2.0	0.9794
AT3G50210			2-oxoglutarate (2OG) and Fe(II...		Lus10006259 [exp]	2.4	0.9694
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10033337 [exp]	2.6	0.9639
AT4G03965			RING/U-box superfamily protein...		Lus10015152 [exp]	4.5	0.9658
AT2G17080			Arabidopsis protein of unknown...		Lus10025124 [exp]	5.7	0.9619
AT3G21540			transducin family protein / WD...		Lus10022194 [exp]	6.7	0.9545
AT3G46540			ENTH/VHS family protein (.1)		Lus10040297 [exp]	6.9	0.9669
AT5G39820	NAC	ANAC094	NAC domain containing protein ...		Lus10007263 [exp]	7.3	0.9645
AT4G32650		AtLKT1, KAT3, A...	A. thaliana low-K+-tolerant 1,...		Lus10037904 [exp]	7.7	0.9604

Compare expression of checked genes

Lus10034306 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.