Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38470 397 / 2e-136 RAD23D RADIATION SENSITIVE23D, Rad23 UV excision repair protein family (.1.2) AT1G79650 338 / 2e-113 AtAO1, RAD23B, RAD23 RADIATION SENSITIVE23B, Arabidopsis thaliana aldehyde oxidase 1, Rad23 UV excision repair protein family (.1.2.3.4) AT3G02540 307 / 1e-100 RAD23C, RAD23-3 RADIATION SENSITIVE23C, PUTATIVE DNA REPAIR PROTEIN RAD23-3, Rad23 UV excision repair protein family (.1.2.3) AT1G16190 252 / 1e-79 RAD23A RADIATION SENSITIVE23A, Rad23 UV excision repair protein family (.1) AT5G16090 89 / 2e-20 unknown protein AT2G35635 50 / 4e-07 UBQ7, RUB2 RELATED TO UBIQUITIN 2, ubiquitin 7 (.1) AT1G31340 50 / 5e-07 NEDD8, ATRUB1, RUB1 ARABIDOPSIS THALIANA RELATED TO UBIQUITIN 1, related to ubiquitin 1 (.1) AT2G47110 48 / 2e-06 UBQ6 ubiquitin 6 (.1.2) AT3G62250 48 / 2e-06 UBQ5 ubiquitin 5 (.1) AT3G52590 47 / 2e-06 HAP4, ERD16, UBQ1, EMB2167 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034308 [exp] 484 / 2e-170 AT3G02540 491 / 7e-174 RADIATION SENSITIVE23C, PUTATIVE DNA REPAIR PROTEIN RAD23-3, Rad23 UV excision repair protein family (.1.2.3) Lus10041465 [exp] 391 / 1e-133 AT3G02540 494 / 4e-175 RADIATION SENSITIVE23C, PUTATIVE DNA REPAIR PROTEIN RAD23-3, Rad23 UV excision repair protein family (.1.2.3) Lus10026110 [exp] 337 / 1e-112 AT1G79650 519 / 0.0 RADIATION SENSITIVE23B, Arabidopsis thaliana aldehyde oxidase 1, Rad23 UV excision repair protein family (.1.2.3.4) Lus10041464 [exp] 272 / 7e-87 AT3G02540 411 / 6e-142 RADIATION SENSITIVE23C, PUTATIVE DNA REPAIR PROTEIN RAD23-3, Rad23 UV excision repair protein family (.1.2.3) Lus10008710 [exp] 169 / 3e-50 AT1G79650 248 / 2e-82 RADIATION SENSITIVE23B, Arabidopsis thaliana aldehyde oxidase 1, Rad23 UV excision repair protein family (.1.2.3.4) Lus10020933 [exp] 57 / 1e-09 ND 64 / 6e-13 Lus10008873 [exp] 47 / 2e-06 AT3G52590 261 / 5e-92 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Lus10030894 [exp] 47 / 3e-06 AT2G47110 257 / 3e-89 ubiquitin 6 (.1.2) Lus10030595 [exp] 47 / 3e-06 AT2G47110 257 / 3e-89 ubiquitin 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G100700 [exp] 416 / 9e-144 AT3G02540 476 / 8e-168 RADIATION SENSITIVE23C, PUTATIVE DNA REPAIR PROTEIN RAD23-3, Rad23 UV excision repair protein family (.1.2.3) Potri.017G114000 [exp] 408 / 2e-140 AT3G02540 369 / 9e-126 RADIATION SENSITIVE23C, PUTATIVE DNA REPAIR PROTEIN RAD23-3, Rad23 UV excision repair protein family (.1.2.3) Potri.010G126200 [exp] 334 / 3e-111 AT5G38470 367 / 1e-125 RADIATION SENSITIVE23D, Rad23 UV excision repair protein family (.1.2) Potri.003G186600 [exp] 273 / 1e-87 AT1G79650 474 / 4e-168 RADIATION SENSITIVE23B, Arabidopsis thaliana aldehyde oxidase 1, Rad23 UV excision repair protein family (.1.2.3.4) Potri.001G038000 [exp] 265 / 1e-84 AT1G79650 456 / 6e-161 RADIATION SENSITIVE23B, Arabidopsis thaliana aldehyde oxidase 1, Rad23 UV excision repair protein family (.1.2.3.4) Potri.008G119700 [exp] 261 / 2e-83 AT5G38470 380 / 3e-131 RADIATION SENSITIVE23D, Rad23 UV excision repair protein family (.1.2) Potri.007G067500 [exp] 50 / 4e-07 AT1G31340 224 / 1e-76 ARABIDOPSIS THALIANA RELATED TO UBIQUITIN 1, related to ubiquitin 1 (.1) Potri.005G096700 [exp] 50 / 5e-07 AT1G31340 270 / 2e-94 ARABIDOPSIS THALIANA RELATED TO UBIQUITIN 1, related to ubiquitin 1 (.1) Potri.005G198700 [exp] 49 / 7e-07 AT1G31340 293 / 1e-103 ARABIDOPSIS THALIANA RELATED TO UBIQUITIN 1, related to ubiquitin 1 (.1) Potri.002G062500 [exp] 49 / 7e-07 AT1G31340 296 / 9e-105 ARABIDOPSIS THALIANA RELATED TO UBIQUITIN 1, related to ubiquitin 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09280 [flax] [poplar] XPC-binding XPC-binding domain CL0072 [flax] [poplar] Ubiquitin PF00240 [flax] [poplar] ubiquitin Ubiquitin family CL0214 [flax] [poplar] UBA PF00627 [flax] [poplar] UBA UBA/TS-N domain
Representative CDS sequence Show only first row Show all	>Lus10034307 pacid=23176074 polypeptide=Lus10034307 locus=Lus10034307.g ID=Lus10034307.BGIv1.0 annot-version=v1.0 ATGCCCTCCGTTATTCCTTACTTGCGATTATGTGCCTTTGGAGTCGTAAAGATATATAAAAACCCTTTTGGCAATCGCGGAGGGCACAAAGAGCTGCTAG TGAAATCGGGAGTTTGCGGTGTTTGTGACGGAGATCGGAGGTCTCTGACAAACGAAGAAGCAGCACGCAGAGCAAGGAATAAGTTATCGCGGCTGCTGCG ACGACGACGACGACCAAGCACGATGAAGATTTCCGTGAAGACTTTGAAGGGCAGTAAGTTCGAAATCGAAGTCAAACCCCAAGACACGGTTACTGATGTA AAAAACCACATAGAAACTGCACAGGGTTCAGATGTTTACCCAGCTGGACAGCAGATGCTTATCTATCAGGGGAAGGTTCTTAAAGATAACACAACTCTCG AGGAGAATAAAGTTGAGGAAAATGGCTTTATTGTTGTCATGCTAACGAAGAGCAAAAGCGCATCTGGAGAAGGTTCAACAGCAAAGGCACCTCAGACTAG TGCTCCACCAGCAGCAGCACCTCAGACTGGTGCCCCATTGTCAACAGCACCTCAAGCTCCTGCAGCAACACCATTGGCTGCTCCTGCTCCTGTCTCAGCG CCCGCATCACTTGCTGCTCCGGTCGCTTCAGTTGCTACTGCGTCTGATGTTGATCCTTATGGTCAAGCAGCATCTAATTTGGTAGCTGGAAATAACTTGG AGGGAGCAGTCCAGCAAATCATTGATATGGGTGGAGGTGCCTGGGATAAAGAAACTGTTATTCGTGCTCTTCGTGCTGCTTACAACAATCCAGAAAGAGC TGTTGAATATCTGTATTCTGGAATCCCCGAGCAAGCTGAGGCTGCACCCGTAGCACCTGTGACTGGTCAACCTGCAAACCCTGCAGTGCCTCAAGCTACA CAGGCAGCAGCGCCAGCATCCATTCCTGCTGCGGGACCCAATGCGAATCCTCTGGATCTTTTCCCTCAGGGCCTTCCTACTGGTGGAGCAGCAGGTGGTG CTGGTGCCGGAAACCTAGACTTCTTGAGAAACAGTCAACAGTTCCAAGCCTTGCGAGCTATGGTGCAGGCAAACCCACAGATATTGCAGCCCATGCTTCA AGAATTGGGAAAGCAGAATCCCAATCTGATGAGAATGATTCAGGAGCATCAGGCCGACTTCCTTCGCCTGATCAATGAACCTGTTGAGGGCGGAGAGGAG GGCATATTGGGGCAGCTTGCTGCTGCAATGCCACAGTCTGTGACTGTGACTCCTGAAGAGCGTGAAGCACTAACCCGACTTGAAGCGATGGGATTCGATC CGCAAATAGTGTTGGAAGTGTTCTTTGCATGCAACAAGAACGAGGAACTGGCTGCCAACTATCTCTTGGATCACATGAACGACTTCGAGGAATGA
AA sequence Show only first row Show all	>Lus10034307 pacid=23176074 polypeptide=Lus10034307 locus=Lus10034307.g ID=Lus10034307.BGIv1.0 annot-version=v1.0 MPSVIPYLRLCAFGVVKIYKNPFGNRGGHKELLVKSGVCGVCDGDRRSLTNEEAARRARNKLSRLLRRRRRPSTMKISVKTLKGSKFEIEVKPQDTVTDV KNHIETAQGSDVYPAGQQMLIYQGKVLKDNTTLEENKVEENGFIVVMLTKSKSASGEGSTAKAPQTSAPPAAAPQTGAPLSTAPQAPAATPLAAPAPVSA PASLAAPVASVATASDVDPYGQAASNLVAGNNLEGAVQQIIDMGGGAWDKETVIRALRAAYNNPERAVEYLYSGIPEQAEAAPVAPVTGQPANPAVPQAT QAAAPASIPAAGPNANPLDLFPQGLPTGGAAGGAGAGNLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPNLMRMIQEHQADFLRLINEPVEGGEE GILGQLAAAMPQSVTVTPEEREALTRLEAMGFDPQIVLEVFFACNKNEELAANYLLDHMNDFEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02540		RAD23C, RAD23-3	RADIATION SENSITIVE23C, PUTATI...		Lus10034307 [exp]	0	1
AT3G57520		RS2, ATSIP2	raffinose synthase 2, seed imb...		Lus10007537 [exp]	6.2	0.9177
AT5G32440			Ubiquitin system component Cue...		Lus10027700 [exp]	8.8	0.8967
AT1G12360		KEU	keule, Sec1/munc18-like (SM) p...		Lus10032196 [exp]	8.9	0.9009
AT1G09840		AtHIR1, ATSK41	hypersensitive induced reactio...		Lus10035771 [exp]	12.0	0.8949
AT1G12360		KEU	keule, Sec1/munc18-like (SM) p...		Lus10024558 [exp]	12.4	0.8988
AT1G75220		AtERDL6	ERD6-like 6, Major facilitator...		Lus10041748 [exp]	13.4	0.9028
AT3G06850		DIN3, LTA1, BCE...	DARK INDUCIBLE 3, 2-oxoacid de...		Lus10037492 [exp]	13.4	0.9129
AT4G35780		STY17	serine/threonine/tyrosine kina...		Lus10041845 [exp]	21.3	0.9020
AT1G28480		roxy19, GRX480	Thioredoxin superfamily protei...		Lus10013962 [exp]	25.6	0.8976
AT2G30880			Pleckstrin homology (PH) domai...		Lus10020739 [exp]	27.3	0.8995

Compare expression of checked genes

Lus10034307 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.