Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38470 419 / 4e-146 RAD23D RADIATION SENSITIVE23D, Rad23 UV excision repair protein family (.1.2) AT1G79650 355 / 4e-121 AtAO1, RAD23B, RAD23 RADIATION SENSITIVE23B, Arabidopsis thaliana aldehyde oxidase 1, Rad23 UV excision repair protein family (.1.2.3.4) AT3G02540 327 / 4e-109 RAD23C, RAD23-3 RADIATION SENSITIVE23C, PUTATIVE DNA REPAIR PROTEIN RAD23-3, Rad23 UV excision repair protein family (.1.2.3) AT1G16190 259 / 9e-84 RAD23A RADIATION SENSITIVE23A, Rad23 UV excision repair protein family (.1) AT5G16090 96 / 2e-23 unknown protein AT3G52590 51 / 1e-07 HAP4, ERD16, UBQ1, EMB2167 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) AT2G36170 51 / 1e-07 Ubiquitin supergroup;Ribosomal protein L40e (.1) AT2G47110 50 / 3e-07 UBQ6 ubiquitin 6 (.1.2) AT3G62250 50 / 3e-07 UBQ5 ubiquitin 5 (.1) AT4G05050 50 / 4e-07 UBQ11 ubiquitin 11 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034307 [exp] 511 / 0 AT3G02540 493 / 1e-173 RADIATION SENSITIVE23C, PUTATIVE DNA REPAIR PROTEIN RAD23-3, Rad23 UV excision repair protein family (.1.2.3) Lus10041465 [exp] 409 / 7e-142 AT3G02540 494 / 4e-175 RADIATION SENSITIVE23C, PUTATIVE DNA REPAIR PROTEIN RAD23-3, Rad23 UV excision repair protein family (.1.2.3) Lus10026110 [exp] 341 / 2e-115 AT1G79650 519 / 0.0 RADIATION SENSITIVE23B, Arabidopsis thaliana aldehyde oxidase 1, Rad23 UV excision repair protein family (.1.2.3.4) Lus10041464 [exp] 325 / 1e-108 AT3G02540 411 / 6e-142 RADIATION SENSITIVE23C, PUTATIVE DNA REPAIR PROTEIN RAD23-3, Rad23 UV excision repair protein family (.1.2.3) Lus10008710 [exp] 167 / 3e-50 AT1G79650 248 / 2e-82 RADIATION SENSITIVE23B, Arabidopsis thaliana aldehyde oxidase 1, Rad23 UV excision repair protein family (.1.2.3.4) Lus10020933 [exp] 57 / 1e-09 ND 64 / 6e-13 Lus10008873 [exp] 51 / 1e-07 AT3G52590 261 / 5e-92 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Lus10030894 [exp] 50 / 3e-07 AT2G47110 257 / 3e-89 ubiquitin 6 (.1.2) Lus10030595 [exp] 50 / 3e-07 AT2G47110 257 / 3e-89 ubiquitin 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G100700 [exp] 442 / 7e-155 AT3G02540 476 / 8e-168 RADIATION SENSITIVE23C, PUTATIVE DNA REPAIR PROTEIN RAD23-3, Rad23 UV excision repair protein family (.1.2.3) Potri.017G114000 [exp] 438 / 3e-153 AT3G02540 369 / 9e-126 RADIATION SENSITIVE23C, PUTATIVE DNA REPAIR PROTEIN RAD23-3, Rad23 UV excision repair protein family (.1.2.3) Potri.010G126200 [exp] 347 / 3e-117 AT5G38470 367 / 1e-125 RADIATION SENSITIVE23D, Rad23 UV excision repair protein family (.1.2) Potri.003G186600 [exp] 288 / 1e-94 AT1G79650 474 / 4e-168 RADIATION SENSITIVE23B, Arabidopsis thaliana aldehyde oxidase 1, Rad23 UV excision repair protein family (.1.2.3.4) Potri.001G038000 [exp] 278 / 9e-91 AT1G79650 456 / 6e-161 RADIATION SENSITIVE23B, Arabidopsis thaliana aldehyde oxidase 1, Rad23 UV excision repair protein family (.1.2.3.4) Potri.008G119700 [exp] 277 / 2e-90 AT5G38470 380 / 3e-131 RADIATION SENSITIVE23D, Rad23 UV excision repair protein family (.1.2) Potri.016G077000 [exp] 50 / 1e-07 AT3G52590 194 / 1e-65 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Potri.015G007100 [exp] 50 / 2e-07 AT3G52590 260 / 2e-91 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Potri.012G024300 [exp] 50 / 2e-07 AT3G52590 260 / 2e-91 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Potri.016G077200 [exp] 50 / 2e-07 AT3G52590 260 / 2e-91 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09280 [flax] [poplar] XPC-binding XPC-binding domain CL0072 [flax] [poplar] Ubiquitin PF00240 [flax] [poplar] ubiquitin Ubiquitin family CL0214 [flax] [poplar] UBA PF00627 [flax] [poplar] UBA UBA/TS-N domain
Representative CDS sequence Show only first row Show all	>Lus10034308 pacid=23175856 polypeptide=Lus10034308 locus=Lus10034308.g ID=Lus10034308.BGIv1.0 annot-version=v1.0 ATGAAGATTTTCGTGAAGACTTTGAAGGGCAGTTCTTTCGAAATCGAAGTCAATCCCCATGACACGATTGCTGGAGTGAAAAAGCACATAGAAACTGCAC AGGGTGCAAATATCTATCCTGCTGGACAACAGATACTTATCCATCAGGGGAAGGTTCTTAAAGATGACACGACTTTGGATGAAAACAAAGTTGTAGAAGA GAGCTTTATTGTTGTCATGCTTACAAAGAGTAAAAGCACATCTGGAGAAGGTTCGACTGCCTCAGCAGCAAAGACCAGTGCCCCATCATCAACGACACCT CAAACCAGTGCCCCATTGTCACCAGCGCCTGCAGCAACACCATTAGCTGCTGCCGTCCCAACACCCGCTGCACCTGCAGTACCTGCTGCTCCTGTCGCTT CAGTTGCTGCTACGTCTGATGTTGATCCTTATGGTCAAGCAGCATCTAATTTGGTAGCCGGGAATAACTTGGAGGGAGCAGTCCAGCAAATCATTGATAT GGGTGGAGGTACCTGGGATAAAGAAACTGTTATTCGTGCTCTTCGTGCTGCTTACAACAATCCAGAGAGAGCTGTTGAATATCTGTATTCTGGGATCCCT GAGCAAGCTGAGACTGCACCTGTACAAGCACCTGTGACTGGTCAACCTGCAAACCCTGCAGTGGCTCAAGCTACACAAGCAGCAGCGCCAATTGCCATTC CTCCTGCAGGACCCAATGCGAATCCTCTGGATCTTTTCCCTCAGGGCCTTCCTACTGCTGGAGCAGCAGGTGGTGCCGGTGCAGGAAACCTAGACTTCTT GAGAAACAGTCAACAGTTCCAAGCCTTGCGAGCTATGGTGCAGGCTAACCCACAGATATTGCAGCCCATGCTTCAAGAATTAGGAAAGCAGAATCCCCAA CTGATGAGACTAATTCAGGAGCACCAGACGGACTTTCTTCGCCTAATAAATGAACCTGTCGAGGGTGGTGAGGAGGGCATATTGGGGCAGCTTGCTGCTG CAATGCCGCAGGCGGTGCAAGTGACTCCCGAAGAGCGCGAAGCACTGGGCCGACTTGAAGCAATGGGGTTTGATCCACAAATAGTGTTGGAAGTGTTCTT TGCATGCAACAAGAACGAAGAACTGGCTGCCAACTATCTCTTAGATCACATGAACGATTTTGAGGAATGA
AA sequence Show only first row Show all	>Lus10034308 pacid=23175856 polypeptide=Lus10034308 locus=Lus10034308.g ID=Lus10034308.BGIv1.0 annot-version=v1.0 MKIFVKTLKGSSFEIEVNPHDTIAGVKKHIETAQGANIYPAGQQILIHQGKVLKDDTTLDENKVVEESFIVVMLTKSKSTSGEGSTASAAKTSAPSSTTP QTSAPLSPAPAATPLAAAVPTPAAPAVPAAPVASVAATSDVDPYGQAASNLVAGNNLEGAVQQIIDMGGGTWDKETVIRALRAAYNNPERAVEYLYSGIP EQAETAPVQAPVTGQPANPAVAQATQAAAPIAIPPAGPNANPLDLFPQGLPTAGAAGGAGAGNLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPQ LMRLIQEHQTDFLRLINEPVEGGEEGILGQLAAAMPQAVQVTPEEREALGRLEAMGFDPQIVLEVFFACNKNEELAANYLLDHMNDFEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02540		RAD23C, RAD23-3	RADIATION SENSITIVE23C, PUTATI...		Lus10034308 [exp]	0	1
AT1G08370		DCP1, ATDCP1	decapping 1 (.1)		Lus10017007 [exp]	2.0	0.6928
AT4G31300		PBA1	N-terminal nucleophile aminohy...		Lus10026984 [exp]	4.9	0.6596
AT3G54620	bZIP	BZO2H4, ATBZIP2...	BASIC LEUCINE ZIPPER O2 HOMOLO...		Lus10018759 [exp]	9.9	0.6331
AT1G45000			AAA-type ATPase family protein...		Lus10017972 [exp]	17.0	0.6335
AT4G38790			ER lumen protein retaining rec...		Lus10007570 [exp]	18.2	0.6731
AT3G27310		PUX1	plant UBX domain-containing pr...		Lus10014616 [exp]	21.7	0.6356
AT1G53750		RPT1A	regulatory particle triple-A 1...		Lus10031243 [exp]	25.7	0.6107
AT2G30530			unknown protein		Lus10034444 [exp]	27.9	0.6358
AT3G58490		AtSPP1	sphingoid phosphate phosphatas...		Lus10000850 [exp]	35.2	0.5729
AT5G54680	bHLH	bHLH105, ILR3	iaa-leucine resistant3, basic ...		Lus10011167 [exp]	37.9	0.6136

Compare expression of checked genes

Lus10034308 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.