Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32420 85 / 3e-18 F-box and associated interaction domains-containing protein (.1) AT4G38870 76 / 1e-14 F-box and associated interaction domains-containing protein (.1) AT5G42430 73 / 5e-14 F-box and associated interaction domains-containing protein (.1) AT1G19160 69 / 7e-13 F-box family protein (.1) AT1G50870 69 / 2e-12 F-box and associated interaction domains-containing protein (.1) AT5G50220 67 / 4e-12 F-box family protein (.1) AT5G62660 66 / 1e-11 F-box and associated interaction domains-containing protein (.1) AT1G11270 65 / 1e-11 F-box and associated interaction domains-containing protein (.1.2.3) AT1G30790 64 / 8e-11 F-box and associated interaction domains-containing protein (.1) AT5G62510 62 / 3e-10 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003705 [exp] 315 / 1e-104 AT4G38870 72 / 1e-13 F-box and associated interaction domains-containing protein (.1) Lus10011190 [exp] 223 / 2e-67 AT1G32420 78 / 1e-15 F-box and associated interaction domains-containing protein (.1) Lus10013934 [exp] 220 / 3e-67 AT1G11270 72 / 7e-14 F-box and associated interaction domains-containing protein (.1.2.3) Lus10011210 [exp] 218 / 5e-66 AT1G32420 87 / 7e-19 F-box and associated interaction domains-containing protein (.1) Lus10016866 [exp] 219 / 5e-65 AT1G32420 84 / 2e-17 F-box and associated interaction domains-containing protein (.1) Lus10018460 [exp] 207 / 3e-63 AT1G32420 66 / 9e-12 F-box and associated interaction domains-containing protein (.1) Lus10007285 [exp] 193 / 4e-57 AT3G04660 82 / 7e-17 F-box and associated interaction domains-containing protein (.1) Lus10007277 [exp] 193 / 4e-57 AT3G04660 82 / 6e-17 F-box and associated interaction domains-containing protein (.1) Lus10011197 [exp] 191 / 1e-55 AT1G47790 86 / 6e-18 F-box and associated interaction domains-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G458400 [exp] 99 / 2e-22 AT2G31470 113 / 8e-28 DROUGHT TOLERANCE REPRESSOR, F-box and associated interaction domains-containing protein (.1) Potri.007G074084 [exp] 67 / 5e-12 AT1G11270 83 / 1e-17 F-box and associated interaction domains-containing protein (.1.2.3) Potri.012G099733 [exp] 61 / 5e-10 AT3G16210 92 / 2e-20 F-box family protein (.1) Potri.002G223000 [exp] 61 / 6e-10 AT3G07870 467 / 5e-164 F-box and associated interaction domains-containing protein (.1) Potri.014G162600 [exp] 61 / 6e-10 AT3G07870 467 / 9e-164 F-box and associated interaction domains-containing protein (.1) Potri.001G318400 [exp] 59 / 2e-09 AT3G06240 142 / 3e-38 F-box family protein (.1) Potri.001G035500 [exp] 59 / 2e-09 AT4G12560 271 / 3e-87 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.012G014300 [exp] 57 / 1e-08 AT3G16210 88 / 6e-19 F-box family protein (.1) Potri.017G012200 [exp] 57 / 1e-08 AT4G12560 86 / 4e-18 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.017G058000 [exp] 54 / 7e-08 AT3G06240 138 / 5e-37 F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0162 [flax] [poplar] FBA PF07734 [flax] [poplar] FBA_1 F-box associated
Representative CDS sequence Show only first row Show all	>Lus10034309 pacid=23175919 polypeptide=Lus10034309 locus=Lus10034309.g ID=Lus10034309.BGIv1.0 annot-version=v1.0 ATGAAACTTTCATCTAAAGTAACCCAAGGGTTCTGTGAACAGAAGAAGAAGAAGCAGAAGAAGAAGAGGTTTACATGTGGTGATTATGACAAGGCTAATC ATGCTGCTAGTTGTTTAATTGCCGATGATGATCTGGTGGTTCCTCAGATACTCAGCAGGCTACTAGTGAAGTCCCTTATGCGGTTCAAGTGCATCTCTAA AGCTTGGAAGTCGATTATCGAACAAGATTCGCACTTTATCAATTTACACTATAACCATTCAGTAACACGCCCAGGGTTGTTAATTTTCACCACCGGCATT GATTTTCACTGTGATGATGACATTATCCGAGGAGCCAACGTTCACAGCATATGCAATGTCAGCACTGGATTAGCAACACCATGGATCAAGTCAGCTGTAT TGATGTCAAACCGGGATAAGAGTTCTAGAGTCTATCCGAAATGTTCCTTTGGATTTGATCCTGCTACCGGAAACCATAAGGTTATATTTCTGTGGAGTAA ATGCAAAAAGGATCCACCGGTTTGCGAGGTCTTGACTGTTGGGGAGCGTAGGTGGAGAATAATCGACAATGTACCTCCACTCAAGCTCAAACAAGAGGCC AGTGTTTGCGTAAACGGTTCTGTATATTGGCTTACGCATGAGCACACCCCAAAGTATTCCGAATCTCTTGTAGCGTTTGATATCGGATCGGAGCAGTTTA GGGTCATCCCAATGCCGGAATTCACACGTAAGGTGGGTTCTCCTTGGCTTATCTACATGTATGATGTAGTAGAGATGGATGGGTGTCCAACCGTGATACG GAATCATGGTGCAACTGGCTGGGTGAAGATGTGGAAATTTCATGATTGTAGTAACAAGGGTAGTAGCAGTAGTGGTGAGAAAGATTGGAGTGAAGTGAAA ATCAAACTGCTTCCTTGTATACCTATGTTCAAGATTGTTATTTACCATTCCGTACCTGGAATAGAAGGCCTAATGATCTTGGAAACTTATGATATACCAG ATGGTCTTGACATATATCCTAGTGTTTCTTTTGTGAGGAATGTAAAGCTTGCCCGCTTTTATTGTTGCAATCTGAAGAAGAAGACTTTGAGCCCGTTTAA AGTCCATGGAATTTCCTTTCTTCCGGATGATTGCTCTACTAAGTGTGCAACTTTGGTTGAAAGTCTTTTGACTGTTCGATTGCAGCAAAACTAG
AA sequence Show only first row Show all	>Lus10034309 pacid=23175919 polypeptide=Lus10034309 locus=Lus10034309.g ID=Lus10034309.BGIv1.0 annot-version=v1.0 MKLSSKVTQGFCEQKKKKQKKKRFTCGDYDKANHAASCLIADDDLVVPQILSRLLVKSLMRFKCISKAWKSIIEQDSHFINLHYNHSVTRPGLLIFTTGI DFHCDDDIIRGANVHSICNVSTGLATPWIKSAVLMSNRDKSSRVYPKCSFGFDPATGNHKVIFLWSKCKKDPPVCEVLTVGERRWRIIDNVPPLKLKQEA SVCVNGSVYWLTHEHTPKYSESLVAFDIGSEQFRVIPMPEFTRKVGSPWLIYMYDVVEMDGCPTVIRNHGATGWVKMWKFHDCSNKGSSSSGEKDWSEVK IKLLPCIPMFKIVIYHSVPGIEGLMILETYDIPDGLDIYPSVSFVRNVKLARFYCCNLKKKTLSPFKVHGISFLPDDCSTKCATLVESLLTVRLQQN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38870			F-box and associated interacti...		Lus10034309 [exp]	0	1
AT4G32050			neurochondrin family protein (...		Lus10001536 [exp]	2.0	0.9001
AT1G43850		SEU	SEUSS transcriptional co-regul...		Lus10028635 [exp]	2.8	0.8783
AT5G60370			unknown protein		Lus10023342 [exp]	4.4	0.9170
AT1G09320			agenet domain-containing prote...		Lus10031429 [exp]	7.3	0.8945
					Lus10006591 [exp]	10.2	0.8545
AT5G60370			unknown protein		Lus10023343 [exp]	13.3	0.8622
AT2G42990			GDSL-like Lipase/Acylhydrolase...		Lus10029958 [exp]	13.9	0.8476
AT5G16270		SYN4, ATRAD21.3	ARABIDOPSIS HOMOLOG OF RAD21 3...		Lus10023028 [exp]	21.7	0.8850
AT3G12210			DNA binding (.1.2)		Lus10018653 [exp]	23.0	0.8602
AT3G28715			ATPase, V0/A0 complex, subunit...		Lus10033022 [exp]	24.7	0.7861

Compare expression of checked genes

Lus10034309 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.