Plant FIBer expression Database

Lus10034310 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G13360 110 / 2e-30 unknown protein
AT3G25870 86 / 2e-21 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041461
[exp]
334 / 7e-119 AT1G13360 111 / 5e-31 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G126000
[exp]
186 / 2e-60 AT1G13360 151 / 1e-46 unknown protein
Potri.008G119800
[exp]
169 / 9e-54 AT1G13360 108 / 1e-29 unknown protein
Potri.015G054300
[exp]
82 / 2e-19 AT1G13360 87 / 3e-21 unknown protein
PFAM info
Representative CDS sequence
>Lus10034310 pacid=23175967 polypeptide=Lus10034310 locus=Lus10034310.g ID=Lus10034310.BGIv1.0 annot-version=v1.0
ATGGAAGAAGAGCTAGGTAACAAGAAGCGTACAAGAGACGACGCCACCCTAGATCTGTCCTTCGACTTCCCGGAGGTGAAAAAATTACGGGAGGATTTGT
TCGACGAGTCGGATCCTGACCCCACCGTTCAGGATCTGGATTCCGTCATGAAGAGCTTTCAACAAGAGATCTCCCCGGCGTCATCGTCGCTGACCACCCC
GGTAGTCGTTGACCTGACGTCGGAATCTGAAGATTCGCAGGCCGAGCTTGGATTTCTGCTGGAAGCCTCTGATTATGAGCTCGGTTTGCCTCCTTCGTCT
ACCGGACAGGAGGATAAAAAAACCGTGGAGGCCGAAGCCGATTTGGTGCGCGTCGACTCGGAGGAATCCGCCGGGTTTGGAGGCGATTTGTGGGGGTTTC
AGGACGGGTTTCCGAGTTACGATTCGTTTGACTTGTGCGAGGTGGTGTATGACGAAGGGCTGCTTGATTATTCAAACGTTTGTTTCGATTCGGCGGAGTA
TTCTGACTACTCGTGGCGGTTGGAAACGGCTGCCCCGGCTGAGTGA
AA sequence
>Lus10034310 pacid=23175967 polypeptide=Lus10034310 locus=Lus10034310.g ID=Lus10034310.BGIv1.0 annot-version=v1.0
MEEELGNKKRTRDDATLDLSFDFPEVKKLREDLFDESDPDPTVQDLDSVMKSFQQEISPASSSLTTPVVVDLTSESEDSQAELGFLLEASDYELGLPPSS
TGQEDKKTVEAEADLVRVDSEESAGFGGDLWGFQDGFPSYDSFDLCEVVYDEGLLDYSNVCFDSAEYSDYSWRLETAAPAE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G13360 unknown protein Lus10034310
[exp]
0 1
AT2G38360 PRA1.B4 prenylated RAB acceptor 1.B4 (... Lus10012224
[exp]
1.4 0.8952
AT1G08315 ARM repeat superfamily protein... Lus10008655
[exp]
1.7 0.8736
AT5G42050 DCD (Development and Cell Deat... Lus10023059
[exp]
2.0 0.8893
AT3G16510 Calcium-dependent lipid-bindin... Lus10006523
[exp]
2.4 0.8582
AT1G25400 unknown protein Lus10041438
[exp]
4.0 0.8490
AT2G45760 BAL, BAP2 BON ASSOCIATION PROTEIN 1-LIKE... Lus10036571
[exp]
4.0 0.8603
AT1G12440 A20/AN1-like zinc finger famil... Lus10007015
[exp]
6.5 0.8350
AT4G29120 6-phosphogluconate dehydrogena... Lus10034974
[exp]
7.1 0.8597
AT2G36320 A20/AN1-like zinc finger famil... Lus10020594
[exp]
7.2 0.8366
AT3G61320 Bestrophin-like protein (.1) Lus10037849
[exp]
8.9 0.8059

Lus10034310 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.