Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62270 426 / 7e-149 unknown protein AT2G02880 112 / 4e-28 mucin-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021682 [exp] 553 / 0 AT5G62270 425 / 7e-149 unknown protein Lus10035022 [exp] 545 / 0 AT5G62270 425 / 6e-149 unknown protein Lus10030486 [exp] 115 / 4e-29 AT2G02880 347 / 7e-120 mucin-related (.1) Lus10012838 [exp] 112 / 6e-28 AT2G02880 346 / 4e-119 mucin-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G133900 [exp] 422 / 2e-147 AT5G62270 365 / 3e-124 unknown protein Potri.017G017901 [exp] 307 / 1e-102 AT5G62270 241 / 7e-77 unknown protein Potri.015G004400 [exp] 122 / 4e-32 AT2G02880 335 / 1e-115 mucin-related (.1) Potri.012G021000 [exp] 69 / 4e-14 AT2G02880 161 / 6e-50 mucin-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034311 pacid=23176025 polypeptide=Lus10034311 locus=Lus10034311.g ID=Lus10034311.BGIv1.0 annot-version=v1.0 ATGCACAATCTTCACCGTTTACTATCCAAACTATCTTCAGTCACACTAAGCACTAGTGTAGCTGCTTCAAAATTCCTCAAGGAAACAACCACCCCTGCAT TTCGTACTGAAGCAAGTCAATTCATCAGGACCTATGGGTTCTCTTCACAGTCAGGTAGTGATGGTGGGAATGAAGGAACCGATGAATGGGAAAATGCTGC CGGTGGATCCTTCGGTCAGACTGGGTCTGATGATCTGGGGTGGGACTCTGTTTCATCATGGTCCACTGGATTGACCAAGGATCATTTTAACGGTGAGATG GTGGGGAAAGTGGCTAGTGATGCTGACAAGGGGAGAAATACTTCTCCAAATCCGTTGATATCCGAGTTGCAAGATATAGATGATAGGATAAAAGAATTGG ATGCTGAGAACCGAAAGGGCAAGTCTTTCATTGATGGATGGGAGAACAGATTGCTTGAGATAAGTGTGCTGTTGAAGCAAGTAGAGGAGCCTGGTGCCAG AGGCTCTTACTTGAAGGATTCAGAGAAGTCTGAGATGTACCGATTGCATAAGGAGAACCCTGAAGTTTACACCATTGAGAAGCTTGCCAAGGACTACAAA ATTATGAGGCAGAGAGTGCATGCCATTCTTTGGCTCAAGGAAGAGGAAGAGGAGGAGAGAAAACGTGGTCGTATCTTAGACGACTCGGTTGAACTTCTGC TTGATACATGCCCCGAGTTTTTTAATTCCCATGACCGAGAGTTCCATGTAGCATCCCTTCCTTACAAACCTGATTTCAAGGTAATGCCAGAAGGTTGGGA TGGTACAATTCGGGATCCAGATGAAGTCCACTATGAGATATCCAAGAAAGAGGATGATATGCTTTATCAAGAGTTTGTTCAGAGGATGGAGTTCAACAAA ATGAAAATTGCTGGAAAGGTGAAATGCCACAAATACAGTAGGAGGCGGTCATCTGAAGGGTGGAACTTCACGGTGGAGAAAATGGGAGCTCAAGGAAAAC GAGAAGGCGGTGGCGGGTGGAAGTTTGTAAGCTTGCCGGACGGATCCAGCAGACCTCTTAACGAGACGGAGAAAGTATATGTGAAGCGAGAAACTCCGCG TCGCAGGCGCAAGATTTTCCCATGA
AA sequence Show only first row Show all	>Lus10034311 pacid=23176025 polypeptide=Lus10034311 locus=Lus10034311.g ID=Lus10034311.BGIv1.0 annot-version=v1.0 MHNLHRLLSKLSSVTLSTSVAASKFLKETTTPAFRTEASQFIRTYGFSSQSGSDGGNEGTDEWENAAGGSFGQTGSDDLGWDSVSSWSTGLTKDHFNGEM VGKVASDADKGRNTSPNPLISELQDIDDRIKELDAENRKGKSFIDGWENRLLEISVLLKQVEEPGARGSYLKDSEKSEMYRLHKENPEVYTIEKLAKDYK IMRQRVHAILWLKEEEEEERKRGRILDDSVELLLDTCPEFFNSHDREFHVASLPYKPDFKVMPEGWDGTIRDPDEVHYEISKKEDDMLYQEFVQRMEFNK MKIAGKVKCHKYSRRRSSEGWNFTVEKMGAQGKREGGGGWKFVSLPDGSSRPLNETEKVYVKRETPRRRRKIFP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62270			unknown protein		Lus10034311 [exp]	0	1
AT4G13360			ATP-dependent caseinolytic (Cl...		Lus10019396 [exp]	12.5	0.7761
AT3G05670			RING/U-box protein (.1)		Lus10000086 [exp]	12.5	0.7348
					Lus10023370 [exp]	15.5	0.7923
AT3G59280		TXR1	THAXTOMIN A RESISTANT 1, Prote...		Lus10043207 [exp]	18.2	0.7730
AT5G17350			unknown protein		Lus10035268 [exp]	19.5	0.7716
AT5G04280		AtRZ-1c	AtRZ-1c, RNA-binding (RRM/RBD/...		Lus10000128 [exp]	20.9	0.6931
AT1G47750		PEX11A	peroxin 11A (.1)		Lus10029260 [exp]	26.2	0.7732
AT3G58840		PMD1	peroxisomal and mitochondrial ...		Lus10010937 [exp]	32.0	0.7608
AT4G21350		PUB8, B80	plant U-box 8 (.1)		Lus10020077 [exp]	37.1	0.7698
AT1G73210			Protein of unknown function (D...		Lus10036189 [exp]	37.1	0.7410

Compare expression of checked genes

Lus10034311 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.