Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28480 391 / 4e-135 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) AT4G13070 208 / 4e-64 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) AT3G25440 155 / 2e-43 LOH1 LAG One Homologue 1, RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2) AT3G27550 120 / 5e-30 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) AT3G23070 94 / 2e-20 ATCFM3A CRM family member 3A (.1) AT3G18390 93 / 2e-20 EMB1865 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) AT3G01370 92 / 6e-20 ATCFM2 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) AT4G14510 88 / 2e-18 ATCFM3B CRM family member 3B (.1) AT4G29750 84 / 2e-17 CRS1 / YhbY (CRM) domain-containing protein (.1) AT5G16180 71 / 6e-13 CRS1, ATCRS1 ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, ortholog of maize chloroplast splicing factor CRS1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041459 [exp] 644 / 0 AT2G28480 417 / 3e-145 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Lus10040896 [exp] 199 / 2e-60 AT4G13070 336 / 2e-114 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Lus10009566 [exp] 157 / 2e-43 AT3G25440 431 / 4e-149 LAG One Homologue 1, RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2) Lus10020391 [exp] 155 / 8e-43 AT3G25440 427 / 1e-147 LAG One Homologue 1, RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2) Lus10022280 [exp] 113 / 4e-27 AT3G27550 486 / 1e-167 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Lus10003667 [exp] 112 / 7e-27 AT3G27550 481 / 9e-165 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Lus10039467 [exp] 98 / 8e-22 AT3G01370 939 / 0.0 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) Lus10027610 [exp] 91 / 2e-19 AT4G29750 676 / 0.0 CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10009031 [exp] 89 / 8e-19 AT3G18390 882 / 0.0 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G129600 [exp] 417 / 6e-145 AT2G28480 403 / 1e-139 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Potri.013G083000 [exp] 220 / 8e-69 AT4G13070 331 / 9e-113 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Potri.014G176900 [exp] 153 / 6e-42 AT3G25440 411 / 9e-141 LAG One Homologue 1, RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2) Potri.001G343700 [exp] 118 / 8e-29 AT3G27550 465 / 1e-158 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Potri.001G350801 [exp] 102 / 3e-23 AT3G01370 972 / 0.0 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) Potri.006G148901 [exp] 92 / 7e-21 AT4G29750 314 / 4e-101 CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.010G077100 [exp] 94 / 1e-20 AT3G23070 927 / 0.0 CRM family member 3A (.1) Potri.012G056100 [exp] 92 / 5e-20 AT3G18390 935 / 0.0 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.017G116700 [exp] 70 / 1e-12 AT5G16180 638 / 0.0 ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, ortholog of maize chloroplast splicing factor CRS1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01985 [flax] [poplar] CRS1_YhbY CRS1 / YhbY (CRM) domain
Representative CDS sequence Show only first row Show all	>Lus10034313 pacid=23175927 polypeptide=Lus10034313 locus=Lus10034313.g ID=Lus10034313.BGIv1.0 annot-version=v1.0 ATGGCCAGAACTATGTTCCTTCAGAACCTGCGTAGAGCCTGTTCCTGCGCTGGTGATTCTTCATTTTCACTTGTTAGGTCATCTCGTCCTTTCTCCTCCA TCGGTGTCAGGAGGCGGCCAGTTTTGCTACTCCGCCACCGCCAATCGATTTTTTCTCCATCTGAATCGTCTTCCGCGCTCAGTTTGTGGCAAGATTCCTG GGAATCCAGAAACTTTAGCTATGGGAGTGTGAACCTGGTGATGACGGATGATGGGAAGCCCAAGTTTGAGACCCGTGAGGTTGATCCTCCCAAGAAGCAC AAATGGCAGACAAAGAAGCGACTGAAACTTCAGAGGAAGAGGGACAAGGAGAAGAGGAAAGCTGCCAATAGGAAAGATCCTCGTTCCCTCACTGTTAAGA GGGATAGGAAGAAGCGATTTGCCAATGCAGAGGAGAGAATTAAGTTCAAGCTTAAGCGGGCAAAACTTAAGGAGGCGGCACTGGTTGAAAGGCTGAAGCG GTATGACGTACCGAAAGCTCAGGGTCCTGAGGTCAAACCGCATAAACTCACAGGTGAAGAACGTTTTTACCTTAAGAAGGTTGCTCAGAAGAAGTTGAAT TATGTACCGATTGGACGGAGAGGAGTGTTTGGAGGTGTTATTCTTAACATGCATATGCACTGGAAGAAACATGAGACTGTGAAGGTCATTTGCAAGCCAT GCAAGCCTGGTCAAGTCCATGAGTTCTCTCAGGAAATCGCTAGATTAAGTGGAGGGATCCCTGTCAATATTATTGGAGATGATACCATTGTGTTCTATCG AGGGAAGAAGTATGTTCAACCAGAGGTTATGTCGCCAATCGACACATTGTCAAAAAAGAAGGCACTAGAAAAATCGAAGTATGAGCAATCACTGGAGTCA GTGAGGCGGTTCATTGCTATAGCTGAGAAGGAATTAGAGCTCTACTACAGGCACATCGCACTCTACGGCGACCCGAATGATAGGAATCCAATCAACATAT TGGACGAACCATCACGAGAATCGAGAGGCTTGGGACAAAGGAGAGATATCATCTGTGATTCTGTTGGGCGTGCCGAGATAGAGGCTGATTACAGCAGTGA AGAACTTTCAGAGACTGAAGATGATTTTGAAGATACGGCATCTGCCAGCGAATCTGATTTTGAAGATGAATGA
AA sequence Show only first row Show all	>Lus10034313 pacid=23175927 polypeptide=Lus10034313 locus=Lus10034313.g ID=Lus10034313.BGIv1.0 annot-version=v1.0 MARTMFLQNLRRACSCAGDSSFSLVRSSRPFSSIGVRRRPVLLLRHRQSIFSPSESSSALSLWQDSWESRNFSYGSVNLVMTDDGKPKFETREVDPPKKH KWQTKKRLKLQRKRDKEKRKAANRKDPRSLTVKRDRKKRFANAEERIKFKLKRAKLKEAALVERLKRYDVPKAQGPEVKPHKLTGEERFYLKKVAQKKLN YVPIGRRGVFGGVILNMHMHWKKHETVKVICKPCKPGQVHEFSQEIARLSGGIPVNIIGDDTIVFYRGKKYVQPEVMSPIDTLSKKKALEKSKYEQSLES VRRFIAIAEKELELYYRHIALYGDPNDRNPINILDEPSRESRGLGQRRDIICDSVGRAEIEADYSSEELSETEDDFEDTASASESDFEDE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28480			RNA-binding CRS1 / YhbY (CRM) ...		Lus10034313 [exp]	0	1
AT5G27240			DNAJ heat shock N-terminal dom...		Lus10001726 [exp]	25.1	0.6044
AT3G21295			Tudor/PWWP/MBT superfamily pro...		Lus10037614 [exp]	25.5	0.6034
AT2G29060	GRAS		GRAS family transcription fact...		Lus10037752 [exp]	32.0	0.5782
AT1G18850			unknown protein		Lus10024247 [exp]	38.9	0.5854
AT1G55880			Pyridoxal-5'-phosphate-depende...		Lus10043164 [exp]	39.6	0.5797
AT3G44670			Disease resistance protein (TI...		Lus10023273 [exp]	87.7	0.4671
AT4G02070		ATMSH6, MSH6-1	MUTS HOMOLOG 6-1, ARABIDOPSIS...		Lus10025030 [exp]	116.1	0.5005
AT2G42080			Chaperone DnaJ-domain superfam...		Lus10029287 [exp]	118.7	0.4898
AT5G03150	C2H2ZnF	JKD	JACKDAW, C2H2-like zinc finger...		Lus10026497 [exp]	120.6	0.4965
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10017298 [exp]	141.1	0.5061

Compare expression of checked genes

Lus10034313 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.