Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71350 787 / 0 eukaryotic translation initiation factor SUI1 family protein (.1) AT1G09150 49 / 2e-06 pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041458 [exp] 1153 / 0 AT1G71350 810 / 0.0 eukaryotic translation initiation factor SUI1 family protein (.1) Lus10031485 [exp] 50 / 3e-06 AT3G05590 333 / 9e-116 ribosomal protein L18 (.1) Lus10015197 [exp] 49 / 3e-06 AT1G09150 314 / 5e-110 pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G096600 [exp] 837 / 0 AT1G71350 818 / 0.0 eukaryotic translation initiation factor SUI1 family protein (.1) Potri.005G023600 [exp] 51 / 4e-07 AT1G09150 305 / 1e-107 pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein (.1) Potri.013G013700 [exp] 50 / 7e-07 AT1G09150 307 / 2e-108 pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0178 [flax] [poplar] PUA PF01472 [flax] [poplar] PUA PUA domain CL0178 [flax] [poplar] PF01253 [flax] [poplar] SUI1 Translation initiation factor SUI1
Representative CDS sequence Show only first row Show all	>Lus10034314 pacid=23176127 polypeptide=Lus10034314 locus=Lus10034314.g ID=Lus10034314.BGIv1.0 annot-version=v1.0 ATGTTTAAGAAAGCAGTGGATGCGAAATCTCATCAGAGGCTATCGGGAGCTGACCGTAAGAAGCTCAAACGAACCCTCAAAGACAAATTCCCCCGTGCTT CTGATGCCGACATGGACGTCTTACTCCCTCCCAAGGCTAGTTGGCTTTCTTCTCGTGCAGAGATATCGGTTGCTAAGCTTCAAACTCGGGTTTTGATATA CAGTGTTGAAGGTGACTTCCCTATGTTTTTCGACATTGACGGCCGAGGCACTGAGATTTACCCTACAGTTTTTGCACTCTGGAGAGTACCTGAACTCTTG CCTTCTTTTCTGTTGAAGGGAGGTGAGGTTTCTCGATTTCTTCTCGGAGGGGCTGATTTGATGTTCCCAGGCATTAGTGTTCTTGCTGAAGGCCTACCTT CCTTCCGAGCTGGTGAAGTATGGGCTGTGAAAGTTCCAGGGAACCCAGCTCCTATTGCTGTTGGGTCAGCCACTATGAGTAGTTCTGAGGCAATGAAGGC TGGTCTGCGTGGGAAAGCTTTAAGAATAACACACTACTACAGGGACTCACTTTGGGAGTCCGTTGAGGGCCATTTTGTGCCCAATGAAGGATTTATGGAA GATATTGTCATTCATGATCCAGCTTTTGCTCTCCCGGGTCAAGATTCTGATTCAGCTGAAGCTCTTGACGATTCTCCATTTGATGAACAGAATGTGGAGT TGGCTGGAGCTAGTAACACACTGGATTCTCATCCTTCATCGTCAAAGCAAGCGTCCGATTCCTGTGTTGAACAAATATACGCAGATGTCAGTAACTTGAA GGTTTCAGAAACTATTGACAATGAACCAACCTCGGAGGAACAGCGTACCTTATCTGCTGATGAAGTGGATAGTTTGTTAGACAAATGTCTTTTGCAAGCC CTCCATACGACTGTTAAAGACAAGGATCTCCCAATGCCTGGAAGTACTTTATGGTCAAATCATGTTTTACCATGCAGACCTTCCGCTATCACATTGGATA TCAAGAAATCAACCCACAAGAAACTTTCAAAGTGGTTACAAACCAAGTGTTCCACTGGATTGATATCCGGGAAAGAAGATAAACACAAGAAGGAAACTGT GTTAATCGCAGTTAACCGAAATCACCCGGACTATACTTCCTTCAGGCCTGAGAAAAGGCAGGAGCAACAGATTGAACACTGCGAGGATCAACCAACCAGT GGGAGCAATTCACAGAAAACACTTGAAGTGGTGCAGATATACAAATCAAGTTCGCACGTGAACCCGATTTTCGCCTCAGTTGGAGCCGATACAGGGAGGC TGTATAGTGGTTCCGAAGCGTCTGATGTTGTGTTCAAGTACGTAGAGAAAGAAAACCTGGTGAAGCCAACAGAAAAGTCAACCGTTGTTTTGGACGCAAC GCTATGCGATGCGCTGTTCAAAGGTGCTATCAAGAAAGGATCGACATATCCGACGGTGATTCATAAGAAAGATTTAGGTTCGACGTTTGTTGGTCGGATG CAGCCACACCATATGGTGATCCGAGGTGGCGAATCGGTTGTTCGCAAAGGCGCTTTGAAAACAGTACAGATACTGACGGAAAGGCGCCAAGGAAACAAAA AGGTGACTAAACTGTCAGGCGTGGAAAGTTTCTTGATCGATCCGGAATCGCTGGCGTCTGAACTGCAGAAGAAATTTGCTTGCAGTACATCAACTGGAGA GCTTCCAGGGAAGAAAGGGATGGAAATTATGATCCAAGGTGGTAAAATTGAAGATGTAGCACGTCTTCTTGTTGAACAATATGGGATCCCAAAGAGGTAC ATTGAGGTTCTGGATAAAACCAGGAAATGA
AA sequence Show only first row Show all	>Lus10034314 pacid=23176127 polypeptide=Lus10034314 locus=Lus10034314.g ID=Lus10034314.BGIv1.0 annot-version=v1.0 MFKKAVDAKSHQRLSGADRKKLKRTLKDKFPRASDADMDVLLPPKASWLSSRAEISVAKLQTRVLIYSVEGDFPMFFDIDGRGTEIYPTVFALWRVPELL PSFLLKGGEVSRFLLGGADLMFPGISVLAEGLPSFRAGEVWAVKVPGNPAPIAVGSATMSSSEAMKAGLRGKALRITHYYRDSLWESVEGHFVPNEGFME DIVIHDPAFALPGQDSDSAEALDDSPFDEQNVELAGASNTLDSHPSSSKQASDSCVEQIYADVSNLKVSETIDNEPTSEEQRTLSADEVDSLLDKCLLQA LHTTVKDKDLPMPGSTLWSNHVLPCRPSAITLDIKKSTHKKLSKWLQTKCSTGLISGKEDKHKKETVLIAVNRNHPDYTSFRPEKRQEQQIEHCEDQPTS GSNSQKTLEVVQIYKSSSHVNPIFASVGADTGRLYSGSEASDVVFKYVEKENLVKPTEKSTVVLDATLCDALFKGAIKKGSTYPTVIHKKDLGSTFVGRM QPHHMVIRGGESVVRKGALKTVQILTERRQGNKKVTKLSGVESFLIDPESLASELQKKFACSTSTGELPGKKGMEIMIQGGKIEDVARLLVEQYGIPKRY IEVLDKTRK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71350			eukaryotic translation initiat...		Lus10034314 [exp]	0	1
AT2G37340		RSZ33, ATRSZ33,...	arginine/serine-rich zinc knuc...		Lus10029414 [exp]	3.2	0.8146
AT3G09040			Pentatricopeptide repeat (PPR)...		Lus10010169 [exp]	8.1	0.8087
AT1G68750		ATPPC4	phosphoenolpyruvate carboxylas...		Lus10035050 [exp]	12.0	0.7921
AT1G09040			unknown protein		Lus10029906 [exp]	14.4	0.8093
AT3G61520			Pentatricopeptide repeat (PPR)...		Lus10040633 [exp]	14.5	0.7958
AT3G44530		HIRA	homolog of histone chaperone H...		Lus10020585 [exp]	15.0	0.8277
AT1G03100			Pentatricopeptide repeat (PPR)...		Lus10020775 [exp]	15.2	0.8055
AT1G31650		ATROPGEF14, ROP...	RHO guanyl-nucleotide exchange...		Lus10037260 [exp]	20.5	0.8069
AT5G53150			DNAJ heat shock N-terminal dom...		Lus10008983 [exp]	22.0	0.8089
AT4G02820			Pentatricopeptide repeat (PPR)...		Lus10042574 [exp]	27.7	0.7894

Compare expression of checked genes

Lus10034314 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.