Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53480 1283 / 0 ARM repeat superfamily protein (.1) AT3G08947 996 / 0 ARM repeat superfamily protein (.1) AT3G08943 979 / 0 ARM repeat superfamily protein (.1) AT2G16950 101 / 9e-22 ATTRN1 transportin 1 (.1.2) AT2G16960 67 / 2e-11 ARM repeat superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041453 [exp] 1706 / 0 AT5G53480 1334 / 0.0 ARM repeat superfamily protein (.1) Lus10023246 [exp] 1325 / 0 AT5G53480 1449 / 0.0 ARM repeat superfamily protein (.1) Lus10008864 [exp] 1322 / 0 AT5G53480 1443 / 0.0 ARM repeat superfamily protein (.1) Lus10008863 [exp] 1320 / 0 AT5G53480 1443 / 0.0 ARM repeat superfamily protein (.1) Lus10023247 [exp] 446 / 7e-148 AT5G53480 509 / 3e-172 ARM repeat superfamily protein (.1) Lus10031905 [exp] 139 / 2e-38 AT5G53480 106 / 7e-28 ARM repeat superfamily protein (.1) Lus10014540 [exp] 134 / 6e-36 AT5G53480 106 / 1e-26 ARM repeat superfamily protein (.1) Lus10023999 [exp] 82 / 2e-15 AT2G16950 1380 / 0.0 transportin 1 (.1.2) Lus10025083 [exp] 78 / 2e-14 AT2G16950 1392 / 0.0 transportin 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G010400 [exp] 1372 / 0 AT5G53480 1547 / 0.0 ARM repeat superfamily protein (.1) Potri.012G017500 [exp] 1367 / 0 AT5G53480 1531 / 0.0 ARM repeat superfamily protein (.1) Potri.006G103300 [exp] 985 / 0 AT3G08943 1294 / 0.0 ARM repeat superfamily protein (.1) Potri.016G123600 [exp] 967 / 0 AT3G08943 1288 / 0.0 ARM repeat superfamily protein (.1) Potri.009G138200 [exp] 80 / 6e-15 AT2G16950 1316 / 0.0 transportin 1 (.1.2) Potri.004G177700 [exp] 70 / 6e-12 AT2G16950 1279 / 0.0 transportin 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF03810 [flax] [poplar] IBN_N Importin-beta N-terminal domain CL0020 [flax] [poplar] TPR PF02985 [flax] [poplar] HEAT HEAT repeat
Representative CDS sequence Show only first row Show all	>Lus10034318 pacid=23175944 polypeptide=Lus10034318 locus=Lus10034318.g ID=Lus10034318.BGIv1.0 annot-version=v1.0 ATGGAAGTCACCCAAGTGCTTTTGGCGGCACAGTCGATAGACGGAAATGTACGGAATCAAGCAGAAGAAAGTTTGAGACAGTTTCAAGAGCAGAACCTTC CTTCTTGCTTGTTGTCACTCTCTGGGGAGCTTGCTAATGACGAGAAACCTGCTGAAAGCCGTAAGTTAGCAGGGTTGATTTTGAAGAATGCGTTGGATGC TAAGGAACAGCATAGGAAAGCCGAACTCGTCCAAAGATGGCTATTATTGGATGTTGCGGTGAAGAGTCAGGTCAAGTCTTGCCTAATGAAGACACTTTCT TCACTGGAAGTTGATGCTCGATCCACTGCCTCACAAGTTATTGCAAAGATTGCAGGTATTGAGTATCCCCAGAAACAGTGGCCTGAGTTGATTGGCTCAC TTTTGTCAAATATTCATCAGCTGCCATCTCATTTTAAGCAAGCCACACTTGAGACTCTTGGTTATTTTGGTGAGGAAGTATCTGCTGATGTCGTTGACCA GGAGGATGTGAACAAAATTCTTACAGCGGTAGTTCAGGGAATGAGTGGATCTGAAGTAAGCAGTGAAGTTAGACTTGCTGCTGTTCGTGCACTCCATAAT GCACTTGCCTTTGCTCAAGCTAATTTTAGCAATGACATGGAGCGTGATTATATAATGAAAGTTGTCTGTGAAGCGACCCATTCTCAAGACATTAAGATTA GACAGGCTTCTTTTGAGTGCTTAGTCTCCATTTCATCAATGTATTACGAGAAGCTGGTCCCTTACATCCAGGATTTATTTAACATCACAGCAAAAGCAGT TAAAGAAGATGACGAGTCAGTGGCTCTTCAGGCAATTGAGTTTTGGAGTGCAATCTGCGAGGAGGAAATAGATATCCTAGAAGAATATGGTGATATCTTT ACTGATGAAACCAATATACCATGTTTTTATTTTGTCAAGCAGGCTCTTCCTGCACTTGTACCAATCTTATTGGAGACAATCCTGAAACAAGAGGAGGATC AAGATCAGGATGAAGAGGCATGGAACATTGCAATGGCTGGAGGGACTTGTCTTTATCTGGTTGCACGTACTGTTGGGGATGATGTTGTTCCGCTTGTGAT GCCATTCATTGAACAAAACATTACAAAGCCAGATTGGAGACAAAGGGAAGCAGCAACTTATGCTTTTGGCTCAATCTTGGAGGGACCCTCCATTGCGCAA TTAACTCCTCTTGTGAATGTTGCTTTGGGTTTCATGCTAACTGCTCTAATGCAGGATCCAAATAACCATGTGAAAGATACCACTGGTTGGACTCTTGGTC GCATCTTTGAGTTTCTCCATGGGCCCACTACAGATTCTAGCATAATATCTAAAGAAAACTGCAAACAGATCATCTCGGTTCTGCTCCATAGTATGAAGGA TGCACCAAATGTAGCAGAAAAGGCTTGTGGTGCTCTTTACTTCCTTGCACAAGGCTATGAAGATTCAGCTTCTTGTCCTCTAACTCCCTGTTTTCAGGAA ATTGTTCAGTCCTTGCTTACTGCTTCTCACAGGGAAGATGCTGGGGAGTCGAGGTTAAGGAGTGCTGCTTATGAAACTCTGAATGAGGTTGTAAGGTGCT CAACTGACGAAAATGCATCTTTGGTTTTGCAACTAGTTCAGGTCATTAAGGATGAGCTCTTGAAGAGTCTTGAAGGACAAGCACTGCCAGATAGACAGAA ACAGGGTGAATTGCAGGGTTCTCTTTGTGGGTGTTTACAAGTCATCATTCAAAAGCTAGGAGCTTCAGAACAGACAAAGATTGCCTTGATGCACCATGCT GATGACATAATGATACTCTTTCTCAGGGTTTTGGGCTATAGAAGTGCAACTGTTAGTGAAGAGGCCATGCTAGCTATTGGAGCCCTAGCCTATGCGGCTG GTCCTAGTTTTGAAAAATACATGGCAGAGCTTTTTAAGTATTTGGAGATGGGCCTTCAGAATTTTGAGGAGTACCAGGTATGTGCTGTGACAGTAGGTGT TGTGGGTGACATCTGCAGGGCCTTGGAAGGCAAGGTCTTACCTTATTGTGATGGGATTATGACAGAACTCCTCAAAGATCTATCAAGCAATCAGCTACAC CGATCCGTGAAGCCTCCAATTTTCTCGTGTCTCGGTGATATTGCGTTGGCTATTGGTCCAGAATTTGAGAAGTATCTGATGCATTCTACACCGATGCTTC AAAGTGCTGCACAGTTGTCTGCACAGACAGAAGGTGCTGATGATGAAATGATCGAGTACGCAAATTCACTGAGAAGTGGAATTTTGGAGGCATATTCTGG GATCCTTCAGGGTTTCAAGAACACATCCAAGACCCAGCTCTTAATTCCGTATGGACCACACGTGCTCGGGTATTTGGACAGCATTTACAAGGGAAAGGAC ATGGATGACTTTGTGATGAAAGCAGCCATCGGTGTACTTGGAGATTTGGCGGATACGCTGGGAAATAGTGCTGGTTCTTTGATACAGCAGTCTCATTTCT GCAGAGACTTCCTGAATGAATGTCTGTCATCCACAGATGAGAGTATCAAGGAATCTGCTGAGTGGGCTAAGTTGGCCATCACAAAGGCCATCTCTGTTTG A
AA sequence Show only first row Show all	>Lus10034318 pacid=23175944 polypeptide=Lus10034318 locus=Lus10034318.g ID=Lus10034318.BGIv1.0 annot-version=v1.0 MEVTQVLLAAQSIDGNVRNQAEESLRQFQEQNLPSCLLSLSGELANDEKPAESRKLAGLILKNALDAKEQHRKAELVQRWLLLDVAVKSQVKSCLMKTLS SLEVDARSTASQVIAKIAGIEYPQKQWPELIGSLLSNIHQLPSHFKQATLETLGYFGEEVSADVVDQEDVNKILTAVVQGMSGSEVSSEVRLAAVRALHN ALAFAQANFSNDMERDYIMKVVCEATHSQDIKIRQASFECLVSISSMYYEKLVPYIQDLFNITAKAVKEDDESVALQAIEFWSAICEEEIDILEEYGDIF TDETNIPCFYFVKQALPALVPILLETILKQEEDQDQDEEAWNIAMAGGTCLYLVARTVGDDVVPLVMPFIEQNITKPDWRQREAATYAFGSILEGPSIAQ LTPLVNVALGFMLTALMQDPNNHVKDTTGWTLGRIFEFLHGPTTDSSIISKENCKQIISVLLHSMKDAPNVAEKACGALYFLAQGYEDSASCPLTPCFQE IVQSLLTASHREDAGESRLRSAAYETLNEVVRCSTDENASLVLQLVQVIKDELLKSLEGQALPDRQKQGELQGSLCGCLQVIIQKLGASEQTKIALMHHA DDIMILFLRVLGYRSATVSEEAMLAIGALAYAAGPSFEKYMAELFKYLEMGLQNFEEYQVCAVTVGVVGDICRALEGKVLPYCDGIMTELLKDLSSNQLH RSVKPPIFSCLGDIALAIGPEFEKYLMHSTPMLQSAAQLSAQTEGADDEMIEYANSLRSGILEAYSGILQGFKNTSKTQLLIPYGPHVLGYLDSIYKGKD MDDFVMKAAIGVLGDLADTLGNSAGSLIQQSHFCRDFLNECLSSTDESIKESAEWAKLAITKAISV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53480			ARM repeat superfamily protein...		Lus10034318 [exp]	0	1
AT5G19320		RANGAP2	RAN GTPase activating protein ...		Lus10034066 [exp]	1.4	0.9410
AT3G55220		AtSAP130b, SAP1...	Arabidopsis thaliana spliceoso...		Lus10040321 [exp]	4.5	0.9352
AT5G15610			Proteasome component (PCI) dom...		Lus10030706 [exp]	7.7	0.9243
AT1G09770	MYB	ATCDC5, AtMYBCD...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10043452 [exp]	8.5	0.8915
AT2G05120			Nucleoporin, Nup133/Nup155-lik...		Lus10001742 [exp]	8.8	0.9338
AT4G02110			transcription coactivators (.1...		Lus10001455 [exp]	8.9	0.9349
AT5G26830			Threonyl-tRNA synthetase (.1)		Lus10005351 [exp]	9.6	0.9164
AT1G50240		FU	FUSED, Protein kinase family p...		Lus10039167 [exp]	9.8	0.9357
AT3G03960			TCP-1/cpn60 chaperonin family ...		Lus10007430 [exp]	9.8	0.9218
AT1G02730		SOS6, ATCSLD5	SALT OVERLY SENSITIVE 6, CELLU...		Lus10025046 [exp]	10.2	0.9353

Compare expression of checked genes

Lus10034318 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.