Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68530 895 / 0 KCS6, CER6, POP1, G2, CUT1 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) AT1G25450 890 / 0 KCS5, CER60 ECERIFERUM 60, 3-ketoacyl-CoA synthase 5 (.1) AT2G16280 671 / 0 KCS9 3-ketoacyl-CoA synthase 9 (.1) AT1G19440 664 / 0 KCS4 3-ketoacyl-CoA synthase 4 (.1) AT4G34510 620 / 0 KCS17, KCS2 3-ketoacyl-CoA synthase 17 (.1) AT2G26640 609 / 0 KCS11 3-ketoacyl-CoA synthase 11 (.1) AT1G04220 608 / 0 KCS2 3-ketoacyl-CoA synthase 2 (.1) AT1G01120 592 / 0 KCS1 3-ketoacyl-CoA synthase 1 (.1) AT5G43760 582 / 0 KCS20 3-ketoacyl-CoA synthase 20 (.1) AT2G26250 565 / 0 KCS10, FDH FIDDLEHEAD, 3-ketoacyl-CoA synthase 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041452 [exp] 1021 / 0 AT1G25450 890 / 0.0 ECERIFERUM 60, 3-ketoacyl-CoA synthase 5 (.1) Lus10002533 [exp] 681 / 0 AT1G19440 890 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10001657 [exp] 678 / 0 AT1G19440 892 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10026345 [exp] 675 / 0 AT1G19440 889 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10042318 [exp] 674 / 0 AT1G19440 890 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10019446 [exp] 609 / 0 AT2G26640 897 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Lus10043300 [exp] 608 / 0 AT2G26640 897 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Lus10006637 [exp] 605 / 0 AT1G04220 819 / 0.0 3-ketoacyl-CoA synthase 2 (.1) Lus10002691 [exp] 596 / 0 AT1G01120 845 / 0.0 3-ketoacyl-CoA synthase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G125300 [exp] 934 / 0 AT1G68530 915 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) Potri.008G120300 [exp] 917 / 0 AT1G68530 895 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) Potri.004G155600 [exp] 684 / 0 AT1G19440 899 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Potri.009G116700 [exp] 678 / 0 AT1G19440 899 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Potri.014G196200 [exp] 653 / 0 AT1G19440 854 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Potri.018G032200 [exp] 637 / 0 AT2G26640 867 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.008G160000 [exp] 633 / 0 AT2G26640 821 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.006G249200 [exp] 627 / 0 AT2G26640 886 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G079300 [exp] 609 / 0 AT2G26640 793 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G079400 [exp] 608 / 0 AT2G26640 793 / 0.0 3-ketoacyl-CoA synthase 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [flax] [poplar] Thiolase PF08392 [flax] [poplar] FAE1_CUT1_RppA FAE1/Type III polyketide synthase-like protein CL0046 [flax] [poplar] Thiolase PF08541 [flax] [poplar] ACP_syn_III_C 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Representative CDS sequence Show only first row Show all	>Lus10034319 pacid=23175847 polypeptide=Lus10034319 locus=Lus10034319.g ID=Lus10034319.BGIv1.0 annot-version=v1.0 ATGCCTCCCATCTTGCCGGACTTTTCAAGCTCGGTAAGGCTAAAGTACGTCAAGCTAGGCTACCAATACCTCGTAAACCACTTCCTCTACCTCCTCCTCA TCCCCATAATCACCGCAGCCTTCCTCGAACTCCTCCGAACCGGCCCCGAACAGATCCTAACCTCATTCAACTCCCTCCAACTCGACCTCGTCCACGTCCT ATCCACCATCCTCTTCGTCATCTTCGTCGCCACCTTCTACTTCATGTCCAAGCCACGAACCGTCTACCTCGTCGACTACTCCTGCTACAAGCCCCCTGTC ACCTGCCGCGTCCCTTTCTCCACCTTCATGGAACACTCCCGCCTCATCCTCAAGGACAACCCCAAATCCGTCGAGTTCCAGATGCGAATCCTCGAAAGGT CAGGACTCGGCGAAGAGACATGTCTACCCCCGGCCATCCATTACATCCCACCCAAACCCACCATGGAGTCCGCACGTGGCGAGGCCGAACTCGTCATTTT CTCCGCTGTCGACTCGCTCTTTGAAAAAACCGGTTTGAAACCGAAGGACATCGACATACTGATAGTCAACTGCAGTCTCTTCTCCCCGACCCCGTCTTTA TCCGCCATGGTGATCAACAAGTACAAACTTAGAAGCAACGTGAAGAGCTTTAACTTGTCCGGGATGGGATGTAGCGCCGGGTTGATATCAATCGATCTAG CTAGAGATTTGTTACAAGTGCATCCAAATTCAAACGCCGTCGTAGTGAGTACAGAAATTATTACTCCCAACTACTACCAGGGAAAAGAAAGAGCGATGCT TTTACCCAACTGCCTATTCCGCATGGGTGGGGCCGCTATTTTACTTTCCAACAGACGGTCCCACAGGTCACGTGCCAAGTATAGATTGGTCCACGTCGTT CGTACCCACAAGGGAGGAGATGACAAGGCGTACCGATGCGTGTACGAGGAAGAGGACAGAGAAGGGAAAGTAGGGATAAGTTTGTCCAAAGATTTGATGG CTATAGCAGGGGAGGCGTTAAAGTCAAACATCACGACGATCGGGCCGTTGGTTTTGCCGGCGTCGGAGCAGTTACTTTTCCTGGCGACGTTGATCGGGAG GAAGATATTTAATCCAAAATGGAAGGCCTATATTCCGGATTTTAAGCAGGCGTTTGAGCATTTCTGCATCCACGCGGGGGGGAGGGCGGTGATCGATGAG CTGCAGAAGAATCTACAGCTGTCGGCGGAACACGTGGAGGCGTCGAGGATGACATTGCATAGGTTCGGGAATACGTCGTCGTCTTCGCTGTGGTATGAGC TGAGTTATATTGAGGCGAAAGGGAGGATGAGGAGAGGGGATCGGGTGTGGCAGATTGCATTCGGGAGTGGGTTCAAGTGTAACAGTGCGGTCTGGAAATG TAATCGGACCATCCGGGCTCCGACCGACGGGGCCTGGTCGGATTGTATTGACAGGTACCCGGTTCATATCCCTGAAGTGGTCAAACTCTGA
AA sequence Show only first row Show all	>Lus10034319 pacid=23175847 polypeptide=Lus10034319 locus=Lus10034319.g ID=Lus10034319.BGIv1.0 annot-version=v1.0 MPPILPDFSSSVRLKYVKLGYQYLVNHFLYLLLIPIITAAFLELLRTGPEQILTSFNSLQLDLVHVLSTILFVIFVATFYFMSKPRTVYLVDYSCYKPPV TCRVPFSTFMEHSRLILKDNPKSVEFQMRILERSGLGEETCLPPAIHYIPPKPTMESARGEAELVIFSAVDSLFEKTGLKPKDIDILIVNCSLFSPTPSL SAMVINKYKLRSNVKSFNLSGMGCSAGLISIDLARDLLQVHPNSNAVVVSTEIITPNYYQGKERAMLLPNCLFRMGGAAILLSNRRSHRSRAKYRLVHVV RTHKGGDDKAYRCVYEEEDREGKVGISLSKDLMAIAGEALKSNITTIGPLVLPASEQLLFLATLIGRKIFNPKWKAYIPDFKQAFEHFCIHAGGRAVIDE LQKNLQLSAEHVEASRMTLHRFGNTSSSSLWYELSYIEAKGRMRRGDRVWQIAFGSGFKCNSAVWKCNRTIRAPTDGAWSDCIDRYPVHIPEVVKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68530		KCS6, CER6, POP...	POLLEN-PISTIL INCOMPATIBILITY ...		Lus10034319 [exp]	0	1
AT1G25450		KCS5, CER60	ECERIFERUM 60, 3-ketoacyl-CoA ...		Lus10041452 [exp]	1.0	0.9942
AT1G17840		AtABCG11, WBC11...	DESPERADO, CUTICULAR DEFECT AN...		Lus10018268 [exp]	2.0	0.9592
AT3G16370			GDSL-like Lipase/Acylhydrolase...		Lus10006856 [exp]	2.4	0.9359
AT5G37550			unknown protein		Lus10020807 [exp]	2.8	0.9301
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10009961 [exp]	4.2	0.9151
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10027942 [exp]	4.7	0.8707
AT1G17840		AtABCG11, WBC11...	DESPERADO, CUTICULAR DEFECT AN...		Lus10040644 [exp]	5.0	0.9294
AT4G36250		ALDH3F1	aldehyde dehydrogenase 3F1 (.1...		Lus10041806 [exp]	6.3	0.9041
AT2G47240		CER8, LACS1	LONG-CHAIN ACYL-COA SYNTHASE 1...		Lus10032840 [exp]	7.0	0.9130
AT4G36250		ALDH3F1	aldehyde dehydrogenase 3F1 (.1...		Lus10028357 [exp]	7.2	0.8785

Compare expression of checked genes

Lus10034319 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.