Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25900 521 / 0 HMT-1, ATHMT-1 Homocysteine S-methyltransferase family protein (.1.2.3) AT3G63250 381 / 1e-132 HMT-2, ATHMT-2 ,HMT2 HOMOCYSTEINE METHYLTRANSFERASE-2, homocysteine methyltransferase 2 (.1.2) AT3G22740 377 / 4e-131 HMT3 homocysteine S-methyltransferase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041451 [exp] 650 / 0 AT3G25900 521 / 0.0 Homocysteine S-methyltransferase family protein (.1.2.3) Lus10039356 [exp] 367 / 3e-127 AT3G22740 505 / 0.0 homocysteine S-methyltransferase 3 (.1) Lus10014686 [exp] 365 / 3e-126 AT3G63250 507 / 0.0 HOMOCYSTEINE METHYLTRANSFERASE-2, homocysteine methyltransferase 2 (.1.2) Lus10006602 [exp] 327 / 9e-112 AT3G22740 455 / 7e-162 homocysteine S-methyltransferase 3 (.1) Lus10006901 [exp] 302 / 3e-102 AT3G63250 429 / 8e-153 HOMOCYSTEINE METHYLTRANSFERASE-2, homocysteine methyltransferase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G125200 [exp] 544 / 0 AT3G25900 529 / 0.0 Homocysteine S-methyltransferase family protein (.1.2.3) Potri.005G213100 [exp] 379 / 6e-132 AT3G63250 532 / 0.0 HOMOCYSTEINE METHYLTRANSFERASE-2, homocysteine methyltransferase 2 (.1.2) Potri.010G083600 [exp] 371 / 1e-128 AT3G22740 512 / 0.0 homocysteine S-methyltransferase 3 (.1) Potri.002G049800 [exp] 367 / 3e-127 AT3G63250 512 / 0.0 HOMOCYSTEINE METHYLTRANSFERASE-2, homocysteine methyltransferase 2 (.1.2) Potri.008G155900 [exp] 344 / 4e-118 AT3G22740 485 / 2e-173 homocysteine S-methyltransferase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02574 [flax] [poplar] S-methyl_trans Homocysteine S-methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10034320 pacid=23176065 polypeptide=Lus10034320 locus=Lus10034320.g ID=Lus10034320.BGIv1.0 annot-version=v1.0 ATGGGGTTTGAGAAGGAGTCGCCGGCTACATTGTTGGATGACCTACTGGAGAAGGCAGGCGGCTGCGCGGTGATCGACGGCGGATTCGCCACCCAGCTTG AAAAACACGGCGCTTCCATTAACGACCCGCTCTGGGGCGCTCTCTGCTTGATCAAAGACCCCGACCTCATTCAAAAGGTTCATTTGGAATACTTGGAAGC CGGCGCTGACATTTTAGTGACATCGTCCTATCAGGCCACCATTCCTGGGTTTCTATCAAGGGGACTTTCCACCGAGGAAGCAGAGTCGCTGCTGAAAAAG AGTGTAAATTTAGCTGTAGAAGCTCGCAATAAGTTTTGGGACAGTTTGAAAAGCTATCCTGGAAATGAATACAACAGGGCTTTGGTTGCAGCTTCAATTG GGAGCTATGGTGCTTATCTTGCTGATGGCTCCGAATACAGGGGGTGGTACGGAGAAGATGTTACGTTGGAAAAGCTGAAAGATTTCCATAGACGTAGATT GCAAGTTCTTGTCGAGGCTGGTCCCGATTTGTTGGCGTTCGAGACCATCCCCAATAAGCTTGAAGCTCAGGCTTGTGTGGAGTTGCTTGAAGAGGAAAAA GTGAGGATTCCGTCATGGATTTGCTTCAGCTCGGTTGACGGCCAGAATGCTCCGTCAGGAGAGAGTTTCAAAGATTGCATTGACGTCATAAATAAGAGCA GTAAAGTTATTGCAGTTGGCATCAACTGTGCACCTCCCCAGTTTGTTGAATCCCTCATCTCTAAGTTTCATGAGTGGAGCCATAAGTTTATAGTGGTTTA TCCCAATAGCGGTGAAGTATGGGACGGCAGAGCCAAAAAATGGCTGCCATCTGCATGTTTCGGAGATGACGAATTCCAACTGTGGGCTAAAAGATGGCAC AAGTTAGGAGCTAGCCTAATCGGTGGCTGTTGCAGAACAACGCCTGCTACTGTTACTGCAATTTCAAAGGCCCTCAAACAAAAATCCTGA
AA sequence Show only first row Show all	>Lus10034320 pacid=23176065 polypeptide=Lus10034320 locus=Lus10034320.g ID=Lus10034320.BGIv1.0 annot-version=v1.0 MGFEKESPATLLDDLLEKAGGCAVIDGGFATQLEKHGASINDPLWGALCLIKDPDLIQKVHLEYLEAGADILVTSSYQATIPGFLSRGLSTEEAESLLKK SVNLAVEARNKFWDSLKSYPGNEYNRALVAASIGSYGAYLADGSEYRGWYGEDVTLEKLKDFHRRRLQVLVEAGPDLLAFETIPNKLEAQACVELLEEEK VRIPSWICFSSVDGQNAPSGESFKDCIDVINKSSKVIAVGINCAPPQFVESLISKFHEWSHKFIVVYPNSGEVWDGRAKKWLPSACFGDDEFQLWAKRWH KLGASLIGGCCRTTPATVTAISKALKQKS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25900		HMT-1, ATHMT-1	Homocysteine S-methyltransfera...		Lus10034320 [exp]	0	1
AT5G24130			unknown protein		Lus10001061 [exp]	4.1	0.7267
AT1G47980			unknown protein		Lus10017081 [exp]	5.3	0.6358
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10035423 [exp]	5.5	0.6963
AT4G37840		HKL3	hexokinase-like 3 (.1)		Lus10011584 [exp]	7.2	0.7117
					Lus10026794 [exp]	18.4	0.6929
AT5G12460			Protein of unknown function (D...		Lus10009957 [exp]	21.8	0.6309
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10034098 [exp]	24.9	0.6538
AT3G02280			Flavodoxin family protein (.1)		Lus10033550 [exp]	26.1	0.5590
AT5G05840			Protein of unknown function (D...		Lus10004669 [exp]	29.8	0.6429
AT5G42020		BIP2, BIP	luminal binding protein, Heat ...		Lus10026349 [exp]	39.0	0.6368

Compare expression of checked genes

Lus10034320 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.