Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14750 68 / 1e-12 unknown protein AT2G30120 52 / 3e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041450 [exp] 441 / 4e-157 AT1G55170 84 / 4e-19 unknown protein Lus10015629 [exp] 110 / 9e-28 AT1G55170 236 / 2e-77 unknown protein Lus10037647 [exp] 108 / 4e-27 AT1G55170 233 / 6e-76 unknown protein Lus10015628 [exp] 107 / 4e-27 AT1G55170 211 / 3e-68 unknown protein Lus10030976 [exp] 71 / 2e-13 AT1G67170 294 / 1e-96 unknown protein Lus10035371 [exp] 66 / 3e-12 AT1G67170 284 / 2e-95 unknown protein Lus10038143 [exp] 61 / 5e-10 AT3G14750 275 / 1e-91 unknown protein Lus10042267 [exp] 58 / 4e-09 AT2G30120 157 / 2e-45 unknown protein Lus10026389 [exp] 54 / 4e-08 AT2G30120 159 / 2e-47 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G037900 [exp] 109 / 1e-27 AT1G55170 259 / 2e-86 unknown protein Potri.001G382700 [exp] 68 / 9e-13 AT3G14750 297 / 6e-100 unknown protein Potri.001G281400 [exp] 67 / 2e-12 AT2G30120 161 / 4e-48 unknown protein Potri.009G076700 [exp] 66 / 5e-12 AT3G14750 173 / 8e-52 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034321 pacid=23175985 polypeptide=Lus10034321 locus=Lus10034321.g ID=Lus10034321.BGIv1.0 annot-version=v1.0 ATGAAGGCAACTTGGGCTACTACTTGTTGTGGACCCAAAACTTTCCATGAAACTGGACTTAAGCCCATTTTGTATTCACTCGATGAAATCACCTGTTGTG GTCTTGGCGCAAACCAACCAGCCAGCAGAGGGAGATTGCACACAATTGCAGCAGCAGAACTGCAGAAGGAGAAATGTGCCCCTGTCCCAGTTGATGCTGC CGGGAGGGAGGGAGACATTGTTCCTCACTTACCATTGAATGTGCAACCTTCAATTGCTCCTCCTCCTCCTTTGATACTGTCCATGTCAAGGAGAAGGCGT AGGTCCGGCCAGTCTGATGATTTCCGAGGTTATCAAGATGGTTCTTGGCATGACGAAAATAGATCAATGCCCCTGCACAATCATCCTGCAGCTTTGGAAG AAGAACTTGATTTTCTTCATCAAGAAATGAGGAGGATCATGACTGAGAATGAGGCCATTGTGGATCATAACAGGGCTCTTCAAAGTGAAGTGACACGCAA ATACGGTGAGATTGACAAATTGGAACGGATGATACCTCAACTCCAGGCTGAAAAGGAAACAGATATACGGGAACTAATTCAGACAGGATTGAAGTTAGAA GCAGAATTGCGGTCAAGGGAGCCTCTGAAAGTAGAGGTGAGGCTGTTAAGAGCAGAAGTTGAGCACTTGAATACATCAGTGGACGACTTAACATCTTTCG CCAGCAGTTTAAGACAAGAGATAGAACAAGTCGAAGCTGAGAAAAGACAAGAGGCTTCAATGGAAGCCGAAATAGATGCGATGCACAAACAGCTTATGGA AGCCAGGAGAATATTCGAGCTTGAGAGGAGAGCAAACTACGAAGAGATTCAAAATAGGAAACAGATGGAGAATTACATGGTTGCACTGCATCGTCAACTT CAGGAGCTAAGGGAAGAGCAGCAGGATGAAATTGGAGAGACAAAGGAACCTAGATTAGGTGGAGGCTATCAAAGTATGGTCCTACACCATGGAACGGAAA ACGGCGACAGATTTTCTGACGACAATAATAGTGAAAGGTGA
AA sequence Show only first row Show all	>Lus10034321 pacid=23175985 polypeptide=Lus10034321 locus=Lus10034321.g ID=Lus10034321.BGIv1.0 annot-version=v1.0 MKATWATTCCGPKTFHETGLKPILYSLDEITCCGLGANQPASRGRLHTIAAAELQKEKCAPVPVDAAGREGDIVPHLPLNVQPSIAPPPPLILSMSRRRR RSGQSDDFRGYQDGSWHDENRSMPLHNHPAALEEELDFLHQEMRRIMTENEAIVDHNRALQSEVTRKYGEIDKLERMIPQLQAEKETDIRELIQTGLKLE AELRSREPLKVEVRLLRAEVEHLNTSVDDLTSFASSLRQEIEQVEAEKRQEASMEAEIDAMHKQLMEARRIFELERRANYEEIQNRKQMENYMVALHRQL QELREEQQDEIGETKEPRLGGGYQSMVLHHGTENGDRFSDDNNSER

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55170			unknown protein		Lus10034321 [exp]	0	1
AT5G08010			unknown protein		Lus10040520 [exp]	3.5	0.8617
AT3G12480	CCAAT	NF-YC11	"nuclear factor Y, subunit C11...		Lus10041638 [exp]	4.9	0.8215
AT5G51410			LUC7 N_terminus domain-contain...		Lus10031156 [exp]	5.3	0.8514
AT5G46560			unknown protein		Lus10011046 [exp]	5.7	0.8491
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10012252 [exp]	6.7	0.8214
AT1G53530			Peptidase S24/S26A/S26B/S26C f...		Lus10015272 [exp]	8.4	0.8019
AT5G57910			unknown protein		Lus10022161 [exp]	10.6	0.8106
AT5G53080			Tetratricopeptide repeat (TPR)...		Lus10022387 [exp]	13.4	0.8104
AT5G11470			bromo-adjacent homology (BAH) ...		Lus10038628 [exp]	14.9	0.8152
AT5G52880			F-box family protein (.1)		Lus10039308 [exp]	14.9	0.8028

Compare expression of checked genes

Lus10034321 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.