Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25440 177 / 9e-51 CO COL16 B-box type zinc finger protein with CCT domain (.1) AT1G68520 161 / 6e-45 CO COL6 B-box type zinc finger protein with CCT domain (.1) AT1G73870 100 / 4e-23 CO COL7 B-box type zinc finger protein with CCT domain (.1) AT1G49130 74 / 2e-14 CO COL8 B-box type zinc finger protein with CCT domain (.1.2) AT5G15840 72 / 7e-14 CO FG, CO CONSTANS, B-box type zinc finger protein with CCT domain (.1.2) AT5G15850 66 / 2e-11 CO COL1, ATCOL1 CONSTANS-like 1 (.1) AT3G02380 61 / 4e-10 CO ATCOL2, COL2 CONSTANS-like 2 (.1) AT2G24790 57 / 2e-09 CO COL3, ATCOL3 CONSTANS-like 3 (.1.2) AT5G24930 58 / 8e-09 CO COL4, ATCOL4 CONSTANS-like 4 (.1) AT5G57660 54 / 1e-07 CO COL5, ATCOL5 CONSTANS-like 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041449 [exp] 552 / 0 AT1G25440 288 / 4e-93 B-box type zinc finger protein with CCT domain (.1) Lus10015097 [exp] 54 / 9e-09 AT4G15248 94 / 5e-26 B-box type zinc finger family protein (.1) Lus10020105 [exp] 57 / 1e-08 AT5G24930 398 / 6e-138 CONSTANS-like 4 (.1) Lus10031583 [exp] 54 / 1e-08 AT3G21890 96 / 1e-26 B-box type zinc finger family protein (.1) Lus10026909 [exp] 56 / 2e-08 AT5G24930 404 / 3e-140 CONSTANS-like 4 (.1) Lus10039694 [exp] 53 / 2e-08 AT4G15248 108 / 1e-31 B-box type zinc finger family protein (.1) Lus10027151 [exp] 52 / 4e-08 AT4G15248 109 / 7e-32 B-box type zinc finger family protein (.1) Lus10005106 [exp] 55 / 5e-08 AT3G02380 194 / 6e-59 CONSTANS-like 2 (.1) Lus10015619 [exp] 52 / 6e-07 AT5G57660 210 / 3e-64 CONSTANS-like 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G120400 [exp] 277 / 6e-89 AT1G25440 314 / 2e-103 B-box type zinc finger protein with CCT domain (.1) Potri.010G125100 [exp] 268 / 4e-85 AT1G25440 311 / 3e-102 B-box type zinc finger protein with CCT domain (.1) Potri.015G054600 [exp] 186 / 4e-54 AT1G25440 272 / 2e-87 B-box type zinc finger protein with CCT domain (.1) Potri.017G107500 [exp] 61 / 8e-10 AT3G02380 330 / 7e-112 CONSTANS-like 2 (.1) Potri.004G108320 [exp] 59 / 2e-09 AT3G02380 302 / 8e-101 CONSTANS-like 2 (.1) Potri.018G013800 [exp] 58 / 5e-09 AT5G24930 348 / 2e-118 CONSTANS-like 4 (.1) Potri.006G267700 [exp] 57 / 1e-08 AT5G24930 361 / 1e-123 CONSTANS-like 4 (.1) Potri.018G096084 [exp] 57 / 1e-08 AT5G57660 283 / 5e-93 CONSTANS-like 5 (.1) Potri.007G121100 [exp] 54 / 1e-08 AT4G15248 108 / 2e-31 B-box type zinc finger family protein (.1) Potri.006G173600 [exp] 55 / 4e-08 AT5G57660 315 / 1e-105 CONSTANS-like 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00643 [flax] [poplar] zf-B_box B-box zinc finger
Representative CDS sequence Show only first row Show all	>Lus10034322 pacid=23175909 polypeptide=Lus10034322 locus=Lus10034322.g ID=Lus10034322.BGIv1.0 annot-version=v1.0 ATGATTTCGACCAAGGCTCATGCCCACGTGGCAAGCGCTGTCGGCGGGAAAACCGCCAGAGCCTGCGACAGCTGCATCAGGAAACGAGCCAGGTGGTACT GTGCCGCCGACGACGCTTTCCTCTGCCAGTCTTGCGATTCCTCCGTCCATTCCGCTAACCCTTTAGCCCGCCGCCATGAGAGGGTCCGTTTGAAGACCGC ATCTCTCAAATCCCTATCCGTCGACACTACTAATTCATCCAACGGTGGCTCTGGATCTGTCATTCAGCCGTCTTGGGTGCGCGGGGTCACCAAAAAGGCA CGCACCCCGCGCCCCAACAACAACAACAAAACTACGTCGTCCTCGTCCCCTAATTCCACCGCGCTGATGTTGAGGGCGCCGGGAGTCCCTCTCGTCCCCG AAGTAGGCTCCGACGAGATGTACAATAATGAGGAGGAGGAAGAGCATCAGCTGCTGTACAGAGTCCCAATCTTCGATCCGATTGAGCTCTGCGGCAATAA TAATAATTCTAACAATTCTAACGACGACACAATAATCCAACATCGACACCACCACAACAACCAGCAGCAAACGACGTCGTCGATGGATTCGAGCTGCTTG CAGGGATTGGTGCTGCCGTCGGACATGGATTTCGCGGAATTTGCTGCTGACGTGGAGAGCTTGCTTGGCAGAGGGCTGGAGAACGAGTCGTTCGGGATGG AGGAGCTAGGGATTCTGGATTCGTGTAGTAAATTAGTAGATGATGATGACGAAAAATTGGTTAAGATGGAGAAGGAGGACCTGCAGGATTACGGAGGAAT TGATTTGGAAATGGAGATGATGGCGAAAGAAGAAGAAGAGGCTGCTCCGTTCCAGCTGAGCTTCGAGTATGACGAGGAGGATGAGGTGAAGAAAGGGGGA AGGGGTATAATAATTAGAGGAGAAGATGATTCCAAGGAGGAATTAGAAGATCAGCATGGTAGTACTACAGGGGATGGTGATAGTAGCATTAATGGCGATA AGAAGAGGAAGAGGAACATATTGTTGAGCCTTAATTACGAAGCTGTAATCACCGCTTGGTCTACCACTACTCACGGCGGCTCCTCCCCTTGGACTAACGG CCTCCGTCCAGATTTCGACCTCAACGAATGCTGGCCCGATTGCCTGGGAGGGTGTGGAAGGGAGTTTATGCATCATCAGCAGCATCACATCCATGGATAC GAAGAGAAAAGGCCTAGAATGAAAGGGAGGTTTGTCAAGAGGACACCTTCCAGTACTACCACTACCACTAATACAACTTCTCCAATGCTGCTCCCGCCTT ACACTGCTTTAGTACTTAATAGCAAGAAGTGA
AA sequence Show only first row Show all	>Lus10034322 pacid=23175909 polypeptide=Lus10034322 locus=Lus10034322.g ID=Lus10034322.BGIv1.0 annot-version=v1.0 MISTKAHAHVASAVGGKTARACDSCIRKRARWYCAADDAFLCQSCDSSVHSANPLARRHERVRLKTASLKSLSVDTTNSSNGGSGSVIQPSWVRGVTKKA RTPRPNNNNKTTSSSSPNSTALMLRAPGVPLVPEVGSDEMYNNEEEEEHQLLYRVPIFDPIELCGNNNNSNNSNDDTIIQHRHHHNNQQQTTSSMDSSCL QGLVLPSDMDFAEFAADVESLLGRGLENESFGMEELGILDSCSKLVDDDDEKLVKMEKEDLQDYGGIDLEMEMMAKEEEEAAPFQLSFEYDEEDEVKKGG RGIIIRGEDDSKEELEDQHGSTTGDGDSSINGDKKRKRNILLSLNYEAVITAWSTTTHGGSSPWTNGLRPDFDLNECWPDCLGGCGREFMHHQQHHIHGY EEKRPRMKGRFVKRTPSSTTTTTNTTSPMLLPPYTALVLNSKK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G25440	CO	COL16	B-box type zinc finger protein...		Lus10034322 [exp]	0	1
AT1G25440	CO	COL16	B-box type zinc finger protein...		Lus10041449 [exp]	1.0	0.9467
AT2G47910		CRR6	chlororespiratory reduction 6 ...		Lus10038104 [exp]	1.4	0.9021
AT5G61380		AtTOC1, TOC1, A...	PSEUDO-RESPONSE REGULATOR 1, T...		Lus10000566 [exp]	3.5	0.8685
AT1G30370		DLAH	DAD1-like acylhydrolase, alpha...		Lus10023281 [exp]	5.2	0.8837
AT1G52240		PIRF1, ATROPGEF...	phytochrome interacting RopGEF...		Lus10011443 [exp]	5.7	0.8612
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Lus10019831 [exp]	6.4	0.7854
AT2G20570	GARP	ATGLK1, GLK1, G...	ARABIDOPSIS GOLDEN2-LIKE 1, GB...		Lus10039883 [exp]	7.0	0.8674
AT1G49230			RING/U-box superfamily protein...		Lus10006788 [exp]	8.5	0.8520
AT1G72100			late embryogenesis abundant do...		Lus10000723 [exp]	8.5	0.8689
AT2G02950		PKS1	phytochrome kinase substrate 1...		Lus10036746 [exp]	8.8	0.8487

Compare expression of checked genes

Lus10034322 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.