Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54830 1207 / 0 DOMON domain-containing protein / dopamine beta-monooxygenase N-terminal domain-containing protein (.1) AT3G61750 87 / 1e-17 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT4G17280 72 / 8e-13 Auxin-responsive family protein (.1) AT3G07570 71 / 9e-13 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT2G04850 67 / 2e-11 Auxin-responsive family protein (.1) AT5G47530 66 / 4e-11 Auxin-responsive family protein (.1) AT4G12980 64 / 3e-10 Auxin-responsive family protein (.1) AT3G25290 63 / 5e-10 Auxin-responsive family protein (.1.2) AT3G59070 62 / 9e-10 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT5G35735 62 / 1e-09 Auxin-responsive family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041448 [exp] 1984 / 0 AT5G54830 1215 / 0.0 DOMON domain-containing protein / dopamine beta-monooxygenase N-terminal domain-containing protein (.1) Lus10016080 [exp] 82 / 4e-16 AT3G07570 397 / 9e-138 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) Lus10001180 [exp] 79 / 2e-15 AT3G07570 377 / 5e-130 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) Lus10001162 [exp] 79 / 7e-15 AT2G04850 563 / 0.0 Auxin-responsive family protein (.1) Lus10001736 [exp] 77 / 3e-14 AT2G04850 559 / 0.0 Auxin-responsive family protein (.1) Lus10012625 [exp] 71 / 3e-12 AT3G61750 400 / 7e-138 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) Lus10010120 [exp] 68 / 1e-11 AT3G61750 343 / 5e-117 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) Lus10017564 [exp] 66 / 1e-10 AT5G47530 419 / 8e-146 Auxin-responsive family protein (.1) Lus10010498 [exp] 64 / 2e-10 AT5G47530 412 / 1e-142 Auxin-responsive family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G262300 [exp] 1410 / 0 AT5G54830 1182 / 0.0 DOMON domain-containing protein / dopamine beta-monooxygenase N-terminal domain-containing protein (.1) Potri.018G021000 [exp] 1388 / 0 AT5G54830 1197 / 0.0 DOMON domain-containing protein / dopamine beta-monooxygenase N-terminal domain-containing protein (.1) Potri.002G222600 [exp] 97 / 7e-21 AT2G04850 545 / 0.0 Auxin-responsive family protein (.1) Potri.014G161700 [exp] 86 / 3e-17 AT2G04850 577 / 0.0 Auxin-responsive family protein (.1) Potri.014G098700 [exp] 75 / 8e-14 AT3G61750 402 / 2e-138 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) Potri.002G222700 [exp] 72 / 6e-13 AT5G35735 369 / 8e-126 Auxin-responsive family protein (.1) Potri.002G249300 [exp] 72 / 7e-13 AT3G25290 452 / 6e-159 Auxin-responsive family protein (.1.2) Potri.014G162000 [exp] 68 / 2e-11 AT5G47530 369 / 2e-126 Auxin-responsive family protein (.1) Potri.014G197500 [exp] 65 / 1e-10 AT3G07570 402 / 7e-140 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) Potri.019G095800 [exp] 63 / 5e-10 AT5G47530 310 / 7e-103 Auxin-responsive family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0559 [flax] [poplar] CBD9-like PF03351 [flax] [poplar] DOMON DOMON domain CL0559 [flax] [poplar] PF10517 [flax] [poplar] DM13 Electron transfer DM13 CL0328 [flax] [poplar] 2heme_cytochrom PF01578 [flax] [poplar] Cytochrom_C_asm Cytochrome C assembly protein
Representative CDS sequence Show only first row Show all	>Lus10034323 pacid=23175843 polypeptide=Lus10034323 locus=Lus10034323.g ID=Lus10034323.BGIv1.0 annot-version=v1.0 ATGTCTGTGGTCCAGTACTGTCATCCTTTACCTGTAATGAGTAGCTTGGATGCAAGGCTTCAAGCTAGATCAGAGGACAAGGTGCTCTGTAGCATAAATA GATCAGATGTTGTGTCTCGTGATATCTCAAGAATGCCTGGGAAGTTGGAGGAGAACATTAAAAGCATAGACCAGCTATCTGCGATGGCGTCTTTTGGTGA TGATGATCTTGCTGGTGAAGAAGAATCATCATCAGGAAGCCAGACTGGGTTAAAGTTCTACCAACAGAGATATCGTGGGGTAAATTCAGAACCTTTTCAT TTAGGGAGAGGGGGAGGACGGTCTGTAAAAGTAATAAAAAATGTCACACTTCCGTTGCTATGCTGGATGCAAGACATATGCATTCTGATGTCTCTGATTA GTCTGCTCTTTCTTGGTTGCCTTGCCGATTCTGGTCAGTCTTGTCCCAAAACAAGCTCTTTCGTTGGGTTTGAATCCCAATTCTACATGGTGCAGCATCA ACTCCGTGGTGTGATGACCATTGTTGATGACTGCTCATTTAATGTCTCCCAATTTGACATGTTATCTGGCTTGGACGTCCACTGGTGGGGAGCAAGTGCT GTGGATTTTGTTAACATGACCAAGGGTTTTGTGATCTCCGACCAGAAGCTTAATGAGACGTATAAAAATTCCTCTTTTGCTGTTAAACTGAGGAAAAATG TCACCTGGGAACAGATTCAAGTGTTTTCTGTGTGGGATATTCCCTCAGCTTCTGATTTTGGACACGTTATTCTCAAGAATGATTCCACGCTGGAGTCCAG ATTAAGCCCTGGTTTGCCTCCAACTCCATCTGAGAATAACACTAGTCCAGGAAAAGAGAAAGGTCAGATTTTAACAGCACCTACGATGTTTGACAATTGT AAGGTCTTGTCTAAAGACTACAGAGTAAGATGGAGTTTAAGCGCCAACAAAGATTTTGTTGACATAGGACTGGAAGCAGCCATAGGGATCCAGAATTATA TGGCTTTTGGATGGGCCAATGGGTCAAATTCTGACCTAATGATTGGTGCTGATGTATCTGTGGCTGGATTCAGTGAGGAAGGGTGGCCTTTTGCTGATGA TTTTTTCATTACAAAGTATATTGAATGTACTATAGACAAGGACGGTTCAGCTACTGGGGTGTGTCCTGATGCGATATATGAAGGATCAGATCCAGTTGGC TTGGTGAACAATACTCAGACCATTTATGGCCACAGGAAAGATGGTGTGTCATTTGTCAGGTACAGGAGGCCATTGATTTCTGCAGATAAGAAATATGATT TGCCTGTGAATTATACAGAAAAAATGAACGTAATCTGGGCTGTAGGCTTGCTGAGGCCACCAGATTCTTTTATGTCTTACTATCTACCCCTTGACCACGG AGGTCCAGCTGCTGTGGCATATGGACATTTGTTGCTTAATGTATCCGAACATGTGAATGATTGTGTAGGGCCATTGGATGCTGCAGATAAGGAAGATCAG GATTTGATCTTTGCTGATGGAAACGTGCCTCTAGTAGTTACTTCTGGGCCTGCTTTACATTATCCTAATTCTCCCAACCCTTCTAAGGTGTTCTACATAA ACAAGAAGGAGGCACCAGTTTTGAGAGTTGAGAGAGGTGTACCAGTGACGTTCTCTGTGCAAGCTGGACATGACGTTGCATTGTATATAACTTCAGACTT GCTTGGTGGGAATGCCACATTGAGGAATGAGACAGAAACCATATATGCAGGGGGGCCCGAGGCAGAAGGTGTTCAAGCTGATCCAATGGAATTAGTTTGG GCACCAGACAGAAATACCCCGGATCAAGTATACTATCAGTCATTGTATCAGCAGAAAATGGGATGGAGGGTTCAAGTTGTCGATGGGGGTCTTTCTGATA TGTACAATAACAGTGTTTTCTTGGATGATCAGCAAGTAACCTTCTTTTGGACCTTGTCAGATGAGACTTTATCCGTTGCAGCTCGAGGGGAGAAAAAGAG TGGATACGTTGCTATAGGATTTGGTACTGGGATGGTTAACAGCTTTGCTTATGTGGGCTGGATAGATGATGAAGCTAAAGGGCATGTAAACACATACTGG ATCGATGGAATGGATGCCTTGAGCGTGCATCCAACAAATGAAAATTTGACTTACGTAAGGTGCAAATCTGAAAATGGCATCATTACCTTGGAGTTCACTA GGCTTCTGAAACCTCCATGTCCTCACAGAGGAAATATAGAGTGCCAGAATATAATTGATCCAACCAGTCCTCTTAAAGTTGTATGGGCAATGGGTGCTAG TTGGTCCGATGAACATTTGAGCGAGAAAAATATGCATTCAGCAACCAGTCAAAGGCCTGTAAACGTGTTGCTAATGGGTGGATCTACAGAAGCAGAGCAA GATATACGACCTGTATTGGCTGTGCATGGATTTATGATGTTCCTTGCTTGGGGTATTTTGCTTCCTGGAGGTGTTCTATCCGCTAGATACTTAAAGCATC TGAAAGGTGATGGCTGGTACCAAATTCATGTATACTTGCAGTATTCAGGTTTGTCCATTGTCTTGCTCGGCTTTCTGTTTGCGGTAGCTGAGCTTCGAGG GCTATATGTGAGTTCACTGCACGTTAAATTTGGGCTTACCGCTATATTTTTAGCGTGCGCACAGCCCGTAAATGCTTTCATGAGGCCGAAAAAACCTGGT AACGGAGAAGTAGTTACTAAGAAGAGGCTTATGTGGGAGTATTTCCACGTTATAGTGGGCAGGTCAGCCATCGTTGCTGGAATCGTAGCTGTATTCACAG GAATGAAACATATGGGAGACAGATATGGAGGGGAAAACGTTCATGGATATATTTGGGCTCTCATCGCGTGGTTCCTGATGGGATCACTGATGATACTGTA TCTTGAACATAAAGAAAGGCAGAGAAGGAGAGACAGAATCCCCGGGAGAAGTAGCAGTAGTAGTAATTGGGTGTTGGGTAACACCGAAGAAGATGATTCG GTCGATCTCCTCAACTCGACGAGAGCCTCTGACCAAACGGATTTGCGAGACTCGGGGAGAATGGAAGTGCAGTTAGAACCTTTGAACAGATAG
AA sequence Show only first row Show all	>Lus10034323 pacid=23175843 polypeptide=Lus10034323 locus=Lus10034323.g ID=Lus10034323.BGIv1.0 annot-version=v1.0 MSVVQYCHPLPVMSSLDARLQARSEDKVLCSINRSDVVSRDISRMPGKLEENIKSIDQLSAMASFGDDDLAGEEESSSGSQTGLKFYQQRYRGVNSEPFH LGRGGGRSVKVIKNVTLPLLCWMQDICILMSLISLLFLGCLADSGQSCPKTSSFVGFESQFYMVQHQLRGVMTIVDDCSFNVSQFDMLSGLDVHWWGASA VDFVNMTKGFVISDQKLNETYKNSSFAVKLRKNVTWEQIQVFSVWDIPSASDFGHVILKNDSTLESRLSPGLPPTPSENNTSPGKEKGQILTAPTMFDNC KVLSKDYRVRWSLSANKDFVDIGLEAAIGIQNYMAFGWANGSNSDLMIGADVSVAGFSEEGWPFADDFFITKYIECTIDKDGSATGVCPDAIYEGSDPVG LVNNTQTIYGHRKDGVSFVRYRRPLISADKKYDLPVNYTEKMNVIWAVGLLRPPDSFMSYYLPLDHGGPAAVAYGHLLLNVSEHVNDCVGPLDAADKEDQ DLIFADGNVPLVVTSGPALHYPNSPNPSKVFYINKKEAPVLRVERGVPVTFSVQAGHDVALYITSDLLGGNATLRNETETIYAGGPEAEGVQADPMELVW APDRNTPDQVYYQSLYQQKMGWRVQVVDGGLSDMYNNSVFLDDQQVTFFWTLSDETLSVAARGEKKSGYVAIGFGTGMVNSFAYVGWIDDEAKGHVNTYW IDGMDALSVHPTNENLTYVRCKSENGIITLEFTRLLKPPCPHRGNIECQNIIDPTSPLKVVWAMGASWSDEHLSEKNMHSATSQRPVNVLLMGGSTEAEQ DIRPVLAVHGFMMFLAWGILLPGGVLSARYLKHLKGDGWYQIHVYLQYSGLSIVLLGFLFAVAELRGLYVSSLHVKFGLTAIFLACAQPVNAFMRPKKPG NGEVVTKKRLMWEYFHVIVGRSAIVAGIVAVFTGMKHMGDRYGGENVHGYIWALIAWFLMGSLMILYLEHKERQRRRDRIPGRSSSSSNWVLGNTEEDDS VDLLNSTRASDQTDLRDSGRMEVQLEPLNR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54830			DOMON domain-containing protei...		Lus10034323 [exp]	0	1
					Lus10037878 [exp]	1.4	0.9054
AT2G36910		ATMDR1, ATPGP1,...	P-GLYCOPROTEIN 1, ARABIDOPSIS ...		Lus10023929 [exp]	1.7	0.9158
AT3G58050			unknown protein		Lus10016244 [exp]	4.0	0.9049
AT5G11980			conserved oligomeric Golgi com...		Lus10024994 [exp]	4.5	0.8893
AT3G26370			O-fucosyltransferase family pr...		Lus10006227 [exp]	5.7	0.9050
AT1G04860		ATUBP2, UBP2	ubiquitin-specific protease 2 ...		Lus10007120 [exp]	6.2	0.8791
AT4G27500		PPI1	proton pump interactor 1 (.1)		Lus10041932 [exp]	7.3	0.8323
AT3G58050			unknown protein		Lus10017239 [exp]	8.1	0.8847
AT1G80530			Major facilitator superfamily ...		Lus10017971 [exp]	9.9	0.8900
AT1G18580		GAUT11	galacturonosyltransferase 11 (...		Lus10013506 [exp]	10.5	0.9046

Compare expression of checked genes

Lus10034323 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.