Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13380 201 / 3e-66 Protein of unknown function (DUF1218) (.1) AT4G27435 110 / 1e-30 Protein of unknown function (DUF1218) (.1) AT3G15480 104 / 2e-28 Protein of unknown function (DUF1218) (.1) AT1G61065 103 / 4e-28 Protein of unknown function (DUF1218) (.1) AT1G52910 99 / 3e-26 Protein of unknown function (DUF1218) (.1) AT1G68220 91 / 5e-23 Protein of unknown function (DUF1218) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041447 [exp] 265 / 2e-91 AT1G13380 273 / 1e-94 Protein of unknown function (DUF1218) (.1) Lus10018474 [exp] 111 / 4e-31 AT1G61065 219 / 2e-73 Protein of unknown function (DUF1218) (.1) Lus10032662 [exp] 104 / 2e-28 AT3G15480 256 / 3e-88 Protein of unknown function (DUF1218) (.1) Lus10043091 [exp] 104 / 3e-28 AT3G15480 258 / 7e-89 Protein of unknown function (DUF1218) (.1) Lus10043484 [exp] 102 / 3e-27 AT1G68220 276 / 2e-95 Protein of unknown function (DUF1218) (.1) Lus10034105 [exp] 101 / 3e-25 AT1G31860 367 / 1e-125 HISTIDINE BIOSYNTHESIS 2, histidine biosynthesis bifunctional protein (HISIE) (.1) Lus10011208 [exp] 64 / 4e-13 AT1G61065 118 / 3e-34 Protein of unknown function (DUF1218) (.1) Lus10032663 [exp] 46 / 4e-06 AT4G27435 103 / 4e-28 Protein of unknown function (DUF1218) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G124800 [exp] 221 / 6e-74 AT1G13380 208 / 6e-69 Protein of unknown function (DUF1218) (.1) Potri.008G120900 [exp] 218 / 1e-72 AT1G13380 200 / 9e-66 Protein of unknown function (DUF1218) (.1) Potri.011G122700 [exp] 110 / 9e-31 AT4G27435 213 / 3e-71 Protein of unknown function (DUF1218) (.1) Potri.010G120500 [exp] 107 / 3e-29 AT1G68220 284 / 2e-98 Protein of unknown function (DUF1218) (.1) Potri.001G403600 [exp] 106 / 5e-29 AT4G27435 218 / 3e-73 Protein of unknown function (DUF1218) (.1) Potri.008G124100 [exp] 102 / 3e-27 AT1G68220 273 / 3e-94 Protein of unknown function (DUF1218) (.1) Potri.004G038700 [exp] 94 / 4e-24 AT1G61065 205 / 6e-68 Protein of unknown function (DUF1218) (.1) Potri.001G403500 [exp] 58 / 1e-10 AT3G15480 106 / 3e-29 Protein of unknown function (DUF1218) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06749 [flax] [poplar] DUF1218 Protein of unknown function (DUF1218)
Representative CDS sequence Show only first row Show all	>Lus10034324 pacid=23176086 polypeptide=Lus10034324 locus=Lus10034324.g ID=Lus10034324.BGIv1.0 annot-version=v1.0 ATGGGCGAAGGCAGAGGCTCCACTTTGGTTCACCTTTTGGTGGTGCTTCTCAGCCTCGTTGCTTTCGGCTTTGCAGTTGCTGCCGAGAGACGACGGAGTG TTGGACATACAGAGATTGATGTTACTAATCGGACATACTGTGTCTACAACTCTGATGTTGCAACAGGCTATGGAGTAGGTGGTTTCTTGTTTCTTCTTTC CAGTGAATCACTGCTTATGGGTGTAACAAAATGCATGTGCTTCGGTAGACCACTTACTCCCGGTGGTGATCGAGCATGGTCAATCATATACTTTATCTCT TCATGGTTGACTTTTCTCGTTGCGGAAGCCTGTCTAATTGCAGGTGCAACGAAAAACGCATATCACACAAAGTATCGTGGAATGATCTTAGCTCAAAACT TCTCGTGTGAATCGTTGAGGAAAGGCGTTTTCATAGCTGGAGCAGTGTTTGTGGTTGCCACAATGATCCTCAACGTCTATTATTACATGTATTTCTCAAA GGCCACCTCAGGCCATGCTTCTAACAAGACGAATCGCTCGAGTTCCACCGTTGGGATGGCTGGGTATGCGTAG
AA sequence Show only first row Show all	>Lus10034324 pacid=23176086 polypeptide=Lus10034324 locus=Lus10034324.g ID=Lus10034324.BGIv1.0 annot-version=v1.0 MGEGRGSTLVHLLVVLLSLVAFGFAVAAERRRSVGHTEIDVTNRTYCVYNSDVATGYGVGGFLFLLSSESLLMGVTKCMCFGRPLTPGGDRAWSIIYFIS SWLTFLVAEACLIAGATKNAYHTKYRGMILAQNFSCESLRKGVFIAGAVFVVATMILNVYYYMYFSKATSGHASNKTNRSSSTVGMAGYA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13380			Protein of unknown function (D...		Lus10034324 [exp]	0	1
AT5G41850			alpha/beta-Hydrolases superfam...		Lus10021037 [exp]	4.9	0.8203
AT5G64350		FKP12, ATFKBP12...	ARABIDOPSIS THALIANA FK506-BIN...		Lus10016586 [exp]	10.0	0.7857
AT3G05870		APC11	anaphase-promoting complex/cyc...		Lus10031549 [exp]	12.8	0.7885
AT1G54680			unknown protein		Lus10018965 [exp]	18.0	0.7910
AT3G27100			unknown protein		Lus10012534 [exp]	20.2	0.7714
AT5G19930			Protein of unknown function DU...		Lus10017753 [exp]	24.7	0.7694
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10024176 [exp]	25.7	0.7828
AT5G15802			unknown protein		Lus10008785 [exp]	25.9	0.7890
AT5G60335			Thioesterase superfamily prote...		Lus10009162 [exp]	30.0	0.7572
AT1G54680			unknown protein		Lus10033821 [exp]	30.2	0.7852

Compare expression of checked genes

Lus10034324 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.