Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70670 197 / 3e-64 AtCLO4 Arabidopsis thaliana caleosin 4, Caleosin-related family protein (.1) AT1G70680 191 / 7e-62 Caleosin-related family protein (.1) AT1G23240 177 / 2e-56 Caleosin-related family protein (.1.2.3) AT2G33380 150 / 2e-45 AtCLO3, CLO-3, RD20 RESPONSIVE TO DESSICATION 20, Arabidopsis thaliana caleosin 3, Caleosin-related family protein (.1.2) AT4G26740 145 / 2e-43 CLO1, ATPXG1, ATS1 CALEOSIN1, ARABIDOPSIS THALIANA PEROXYGENASE 1, seed gene 1 (.1) AT5G55240 143 / 1e-42 ATPXG2 ARABIDOPSIS THALIANA PEROXYGENASE 2 (.1) AT5G29560 124 / 2e-35 caleosin-related family protein (.1) AT1G23250 111 / 1e-30 Caleosin-related family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041446 [exp] 245 / 1e-83 AT1G70670 203 / 2e-67 Arabidopsis thaliana caleosin 4, Caleosin-related family protein (.1) Lus10014588 [exp] 181 / 5e-58 AT1G70670 197 / 6e-65 Arabidopsis thaliana caleosin 4, Caleosin-related family protein (.1) Lus10023732 [exp] 152 / 4e-46 AT4G26740 360 / 3e-127 CALEOSIN1, ARABIDOPSIS THALIANA PEROXYGENASE 1, seed gene 1 (.1) Lus10011775 [exp] 150 / 2e-45 AT4G26740 361 / 1e-127 CALEOSIN1, ARABIDOPSIS THALIANA PEROXYGENASE 1, seed gene 1 (.1) Lus10032097 [exp] 44 / 5e-05 AT3G01650 514 / 0.0 RING domain ligase1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G107900 [exp] 243 / 3e-82 AT1G70670 272 / 4e-94 Arabidopsis thaliana caleosin 4, Caleosin-related family protein (.1) Potri.008G133800 [exp] 236 / 1e-79 AT1G70670 272 / 4e-94 Arabidopsis thaliana caleosin 4, Caleosin-related family protein (.1) Potri.010G066600 [exp] 145 / 2e-43 AT4G26740 377 / 5e-134 CALEOSIN1, ARABIDOPSIS THALIANA PEROXYGENASE 1, seed gene 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF05042 [flax] [poplar] Caleosin Caleosin related protein
Representative CDS sequence Show only first row Show all	>Lus10034325 pacid=23175936 polypeptide=Lus10034325 locus=Lus10034325.g ID=Lus10034325.BGIv1.0 annot-version=v1.0 ATGGCCGCTTCTAGCACGACCGACGACAAGCAACCAAGTGGTCGTCAGGCAAGTGAGCATAACGTGCTGCAGAAGCATGCTATGTTCTTCGACAGGAATA AAGATGGCGTCATATATCCTTGGGAGACCTTCCAAGGCAAGTCCATTCCCGTCTTCGGGCAATCGGGGCAGGCATTCTATTATCGGCAGGAGGCGCGATC TTCATCAACCTTGGCCTCAGCGGAAAGACCCGACCCGGGACGTGTAGTTTACAAGGGAAAGTTTCCGTCTCCTTTGTTCCCAATTGAAATTAAGAATATT CAAAGAGGTAAACATGGGAGTGACTCTGGTGCTTATGACTCCGAGGGAAGGTTTGTTCCGGAAAAGTTTGAAGAGATTTTTGCCAAGCATGCTAAGACGA ATCGACATGCCTTAACTTCAGAGGAACTCGGGGAGATGTTGAAGCATAATCGAGAACCCAAAAACTATGGAGGATGGTTGGCCAGTTATTCAGAATGGAA AATACTATTCAAGTTGGGAAAGGACAAGAATGGACTGCTGCAGAAAGATACGGTTCAAGCCGTTTATGACGGAAGCCTCTTTGAACGTATGGAGAATGAG AGGGCATTATCAAAGAAACCCTAA
AA sequence Show only first row Show all	>Lus10034325 pacid=23175936 polypeptide=Lus10034325 locus=Lus10034325.g ID=Lus10034325.BGIv1.0 annot-version=v1.0 MAASSTTDDKQPSGRQASEHNVLQKHAMFFDRNKDGVIYPWETFQGKSIPVFGQSGQAFYYRQEARSSSTLASAERPDPGRVVYKGKFPSPLFPIEIKNI QRGKHGSDSGAYDSEGRFVPEKFEEIFAKHAKTNRHALTSEELGEMLKHNREPKNYGGWLASYSEWKILFKLGKDKNGLLQKDTVQAVYDGSLFERMENE RALSKKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70670		AtCLO4	Arabidopsis thaliana caleosin ...		Lus10034325 [exp]	0	1
AT1G68585			unknown protein		Lus10021686 [exp]	1.7	0.9684
					Lus10029977 [exp]	6.2	0.9395
AT1G68585			unknown protein		Lus10035025 [exp]	8.1	0.9442
AT1G23460			Pectin lyase-like superfamily ...		Lus10030602 [exp]	8.4	0.9474
AT3G10410		CPY, SCPL49	CARBOXYPEPTIDASE Y, SERINE CAR...		Lus10037381 [exp]	12.7	0.9464
AT4G35350		XCP1	xylem cysteine peptidase 1 (.1...		Lus10030722 [exp]	15.4	0.9446
AT3G13650			Disease resistance-responsive ...		Lus10039561 [exp]	17.8	0.9440
AT3G45010		SCPL48	serine carboxypeptidase-like 4...		Lus10041338 [exp]	18.5	0.9433
AT1G08290	C2H2ZnF	WIP3	WIP domain protein 3 (.1)		Lus10004887 [exp]	20.7	0.9408
AT3G27210			unknown protein		Lus10011366 [exp]	21.0	0.9413

Compare expression of checked genes

Lus10034325 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.