Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60540 360 / 5e-127 EMB2407, ATPDX2, PDX2 EMBRYO DEFECTIVE 2407, pyridoxine biosynthesis 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041445 [exp] 462 / 3e-167 AT5G60540 388 / 5e-138 EMBRYO DEFECTIVE 2407, pyridoxine biosynthesis 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G012700 [exp] 392 / 9e-140 AT5G60540 386 / 4e-137 EMBRYO DEFECTIVE 2407, pyridoxine biosynthesis 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0014 [flax] [poplar] Glutaminase_I PF01174 [flax] [poplar] SNO SNO glutamine amidotransferase family
Representative CDS sequence Show only first row Show all	>Lus10034326 pacid=23176104 polypeptide=Lus10034326 locus=Lus10034326.g ID=Lus10034326.BGIv1.0 annot-version=v1.0 ATGGTTGTCGGCGTCCTTGCGTTACAGGGTTCTTTTAATGAACACATTTCAGCTCTCAGCAGATTGGGAGTAAAGGGTGTGGAAATTAGGAAGCCAGAGC AGCTTCAAAATGTTAGCTCTCTCATCATTCCTGGTGGCGAAAGTACCACCATGGCTAAGCTTGCTGCGTTCCACAACTTGTTTCCTGCTCTGCGAGAGTT TGTTAAGACGGGAAAACCTGTTTGGGGCACTTGTGCTGGTCTTATCTTCTTGGCAGAGAAGGCAGTGGGGCAGAAAACTGGAGGTCAGGAACTGGTTGGT GGACTAGATTGCACCGTACACAGGAATTACTTTGGCAGTCAGATTCAAAGCTTCGAGGCAGAGCTTTCCATCCCAAAAATAGTGTCTCAGGAAGGTGGTC CTGAAACATTCCGAGGTGTCTTTATTCGTGCTCCTGCAGTCCTTGAAGTTGGCCCAGCAGTTGAAGTATTGGCTGAATATCCGGTACCCTCTGCTAATGT ATTGTATTCAAGCTCTGCTGTCCAAATCCAAGAGGAAAATGCAGTTCCTGAGAAGAAAGTGGTTGTGGCCGTGAAGCAGGGGAATATCCTGGGGACTGCC TTCCACCCTGAGCTTACTGCAGATACTCGATGGCACAGCTATTTCTTGAAGATGGGAAATGATGGTAGAGAAGGATCCTCAAGCACCTTGGTTCCTCTTT TGGGAGGATTAGACGAAAAGCCAAGGATTGAGCTCCCTGTATACCGTTAG
AA sequence Show only first row Show all	>Lus10034326 pacid=23176104 polypeptide=Lus10034326 locus=Lus10034326.g ID=Lus10034326.BGIv1.0 annot-version=v1.0 MVVGVLALQGSFNEHISALSRLGVKGVEIRKPEQLQNVSSLIIPGGESTTMAKLAAFHNLFPALREFVKTGKPVWGTCAGLIFLAEKAVGQKTGGQELVG GLDCTVHRNYFGSQIQSFEAELSIPKIVSQEGGPETFRGVFIRAPAVLEVGPAVEVLAEYPVPSANVLYSSSAVQIQEENAVPEKKVVVAVKQGNILGTA FHPELTADTRWHSYFLKMGNDGREGSSSTLVPLLGGLDEKPRIELPVYR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60540		EMB2407, ATPDX2...	EMBRYO DEFECTIVE 2407, pyridox...		Lus10034326 [exp]	0	1
AT1G36160		GSD1, PAS3, GK,...	PASTICCINO 3, GLOSSYHEAD 1, GU...		Lus10024747 [exp]	2.2	0.7568
AT4G01940		ATCNFU1, NFU1	NFU domain protein 1 (.1)		Lus10009999 [exp]	11.1	0.7316
AT1G10310			NAD(P)-binding Rossmann-fold s...		Lus10042410 [exp]	23.5	0.7135
AT2G44300			Bifunctional inhibitor/lipid-t...		Lus10026220 [exp]	29.5	0.6550
AT3G04870		SPC1, PDE181, Z...	SPONTANEOUS CELL DEATH 1, PIGM...		Lus10009190 [exp]	46.7	0.6113
AT4G16580			Protein phosphatase 2C family ...		Lus10023916 [exp]	48.3	0.6411
AT5G57660	CO	COL5, ATCOL5	CONSTANS-like 5 (.1)		Lus10037636 [exp]	52.0	0.6106
AT5G10730			NAD(P)-binding Rossmann-fold s...		Lus10035719 [exp]	52.7	0.6012
AT4G35640		ATSERAT3;2	serine acetyltransferase 3;2 (...		Lus10010679 [exp]	55.6	0.6209
AT2G33220			GRIM-19 protein (.1)		Lus10035237 [exp]	59.0	0.6359

Compare expression of checked genes

Lus10034326 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.