Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68490 115 / 3e-33 unknown protein AT1G13390 84 / 8e-21 unknown protein AT3G02555 76 / 6e-18 unknown protein AT5G16110 77 / 1e-17 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041444 [exp] 200 / 2e-66 AT1G68490 180 / 5e-58 unknown protein Lus10028474 [exp] 106 / 1e-29 AT5G16110 160 / 8e-50 unknown protein Lus10009170 [exp] 105 / 3e-29 AT5G16110 160 / 7e-50 unknown protein Lus10027557 [exp] 72 / 4e-17 AT1G68490 64 / 3e-14 unknown protein Lus10033560 [exp] 69 / 4e-15 AT5G16110 136 / 3e-40 unknown protein Lus10017599 [exp] 68 / 7e-15 AT5G16110 137 / 8e-41 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G124400 [exp] 139 / 2e-42 AT1G68490 151 / 7e-47 unknown protein Potri.008G121000 [exp] 135 / 4e-41 AT1G68490 150 / 3e-46 unknown protein Potri.017G114700 [exp] 105 / 2e-29 AT5G16110 139 / 4e-41 unknown protein Potri.004G099800 [exp] 102 / 3e-28 AT5G16110 135 / 7e-40 unknown protein Potri.015G047100 [exp] 97 / 8e-26 AT1G68490 116 / 4e-33 unknown protein Potri.012G056500 [exp] 87 / 2e-22 AT1G68490 119 / 2e-34 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034327 pacid=23176088 polypeptide=Lus10034327 locus=Lus10034327.g ID=Lus10034327.BGIv1.0 annot-version=v1.0 ATGCTGCCACTTAGCGATACTGCCAACGACCACCCGGTTCGATCTCTCCGATGGCAGCTTAGCCACCAGACTGAGACTTGTGATTCAAAAGGAGGAAACG ATATTCTGGACATCATCCTCACCAAGGGTGATTACAGTGGCGGTGGTGTGGAGCAGTCGTACCAACCATTATCGTCGTCGCCCCCTTTTTTCAGCGGGTC GCCGCCGAGCAGAGTAGCTAACCCACTAATTCAGGATGCTCGGTTCGGGGAGGAGAAGCTGTCCCATTTCTCACCGATCTCTGGTGTCCCACCTCTGTCC GGCGTATCATCATCATCTCCGACTTCCACGACCTCTACAGGTAGGAAAGGAGGATGCGTCCGGGCAAATTTTGGGGACAAACCGATGGTGAGAGTGGAAG GGTTCGATTGCCTTGACAGGGATAGCAGAAACTGTAGCATCCCTGCTCTGGCATAG
AA sequence Show only first row Show all	>Lus10034327 pacid=23176088 polypeptide=Lus10034327 locus=Lus10034327.g ID=Lus10034327.BGIv1.0 annot-version=v1.0 MLPLSDTANDHPVRSLRWQLSHQTETCDSKGGNDILDIILTKGDYSGGGVEQSYQPLSSSPPFFSGSPPSRVANPLIQDARFGEEKLSHFSPISGVPPLS GVSSSSPTSTTSTGRKGGCVRANFGDKPMVRVEGFDCLDRDSRNCSIPALA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68490			unknown protein		Lus10034327 [exp]	0	1
AT1G10430		PP2A-2	protein phosphatase 2A-2 (.1)		Lus10036657 [exp]	3.7	0.8136
AT5G57190		PSD2	phosphatidylserine decarboxyla...		Lus10009324 [exp]	4.1	0.8407
AT5G58190		ECT10	evolutionarily conserved C-ter...		Lus10027582 [exp]	9.5	0.7679
AT1G12450			SNARE associated Golgi protein...		Lus10006674 [exp]	14.7	0.7855
AT1G80400			RING/U-box superfamily protein...		Lus10023112 [exp]	15.2	0.7655
AT3G55270		MKP1, ATMKP1	ARABIDOPSIS MITOGEN-ACTIVATED ...		Lus10003291 [exp]	16.9	0.7969
AT1G20460			unknown protein		Lus10021826 [exp]	19.3	0.7185
AT1G24160			unknown protein		Lus10029213 [exp]	28.3	0.7327
AT1G69010	bHLH	bHLH102, BIM2	BES1-interacting Myc-like prot...		Lus10004630 [exp]	28.5	0.7048
AT5G17260	NAC	ANAC086	NAC domain containing protein ...		Lus10010096 [exp]	31.0	0.6939

Compare expression of checked genes

Lus10034327 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.