Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010258 [exp] 102 / 3e-29 ND / Lus10001094 [exp] 97 / 1e-26 ND / Lus10034037 [exp] 81 / 2e-20 ND / Lus10018800 [exp] 57 / 7e-11 ND / Lus10012084 [exp] 56 / 2e-10 ND / Lus10019357 [exp] 52 / 3e-08 ND / Lus10013669 [exp] 42 / 1e-05 ND / Lus10012424 [exp] 37 / 0.0006 ND / Lus10038590 [exp] 38 / 0.001 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034328 pacid=23175945 polypeptide=Lus10034328 locus=Lus10034328.g ID=Lus10034328.BGIv1.0 annot-version=v1.0 ATGCCGAGGTTATATTCCTTAACAGAGTTCTACACCTTCGGCAGGTCTCACCTCACAAAGTGCGTGCACAAGCCCTCGCTGCAGCCCATCGCGAGACAGA AACTCAACACTCTCGATTTTTCTTCTTATAGCCTCTGTCTCCACTTAACACTTCCATTCTTTTCCTCTCACCGAAGAGGCATCTCCGACCAGCGGTCGCC GGCGTTCGTCCGTCCGTCGGCTCCGACCCCATCACCCCCTTTACCAGCGAGCCAATCTCCGATTCAAGATGTGATAGGTGGTTCTGCTGGTGGCAAGGAC GGTGATGAAAATTGCCGTCCTAATAAAGCGAAGAAAGAATGGTATAATCTGCATATGGTCGATTATACTAAGACTAACATGTGGATAGAGAAGGTAAAGG TAAGAGATTGGTCTAATGTAGCTGAGATTAACTGTTTCATTAAGGTGGGTTTGCATAAAGATATTGGTGTTCTTGAAAAATAA
AA sequence Show only first row Show all	>Lus10034328 pacid=23175945 polypeptide=Lus10034328 locus=Lus10034328.g ID=Lus10034328.BGIv1.0 annot-version=v1.0 MPRLYSLTEFYTFGRSHLTKCVHKPSLQPIARQKLNTLDFSSYSLCLHLTLPFFSSHRRGISDQRSPAFVRPSAPTPSPPLPASQSPIQDVIGGSAGGKD GDENCRPNKAKKEWYNLHMVDYTKTNMWIEKVKVRDWSNVAEINCFIKVGLHKDIGVLEK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10034328 [exp]	0	1
					Lus10003536 [exp]	8.5	0.9975
AT4G33280	B3	REM16	AP2/B3-like transcriptional fa...		Lus10032872 [exp]	10.9	0.8518
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Lus10025763 [exp]	12.0	0.9975
AT3G18590		AtENODL5	early nodulin-like protein 5 (...		Lus10009617 [exp]	13.0	0.9348
AT3G05610			Plant invertase/pectin methyle...		Lus10031469 [exp]	13.1	0.9348
					Lus10011078 [exp]	14.7	0.9975
AT5G45040		CYTC6A	cytochrome c6A, Cytochrome c (...		Lus10038346 [exp]	15.7	0.8410
AT5G42870		ATPAH2	phosphatidic acid phosphohydro...		Lus10021733 [exp]	17.0	0.9975
AT5G54010			UDP-Glycosyltransferase superf...		Lus10039237 [exp]	19.0	0.9975
AT5G19580			glyoxal oxidase-related protei...		Lus10012979 [exp]	20.2	0.7997

Compare expression of checked genes

Lus10034328 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.