Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68480 99 / 2e-24 C2H2ZnF JAG JAGGED, C2H2 and C2HC zinc fingers superfamily protein (.1) AT1G13400 91 / 7e-22 C2H2ZnF JGL, NUB NUBBIN, JAGGED-LIKE, C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G05120 56 / 4e-09 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G01860 47 / 3e-06 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G27880 47 / 8e-06 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT1G67030 45 / 2e-05 C2H2ZnF ZFP6 zinc finger protein 6 (.1) AT5G43540 44 / 3e-05 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT1G68360 44 / 5e-05 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G48890 42 / 0.0001 C2H2ZnF LATE LATE FLOWERING, C2H2-like zinc finger protein (.1) AT5G14010 40 / 0.0004 C2H2ZnF KNUCKLES, KNU KNUCKLES, C2H2 and C2HC zinc fingers superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041443 [exp] 305 / 1e-103 AT1G68480 103 / 9e-26 JAGGED, C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10033867 [exp] 46 / 6e-06 AT5G43540 65 / 1e-13 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10021213 [exp] 46 / 8e-06 AT3G09290 73 / 2e-16 telomerase activator1 (.1) Lus10026597 [exp] 45 / 9e-06 AT1G66140 85 / 1e-20 zinc finger protein 4 (.1) Lus10014755 [exp] 45 / 1e-05 AT5G43540 63 / 5e-13 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10010388 [exp] 45 / 2e-05 AT1G24625 88 / 4e-21 zinc finger protein 7 (.1) Lus10022204 [exp] 44 / 2e-05 AT3G09290 67 / 2e-15 telomerase activator1 (.1) Lus10041160 [exp] 44 / 4e-05 AT5G43540 69 / 8e-15 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10021881 [exp] 43 / 0.0001 AT5G43540 67 / 3e-14 C2H2 and C2HC zinc fingers superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G121200 [exp] 128 / 4e-35 AT1G68480 111 / 2e-29 JAGGED, C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.010G124200 [exp] 118 / 2e-31 AT1G68480 120 / 7e-33 JAGGED, C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.002G041600 [exp] 52 / 8e-08 AT4G17810 65 / 6e-13 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.008G123100 [exp] 47 / 6e-06 AT1G68360 123 / 4e-34 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.006G063800 [exp] 47 / 1e-05 AT5G01860 92 / 6e-22 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.005G221500 [exp] 45 / 1e-05 AT5G43540 61 / 6e-12 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.010G074400 [exp] 45 / 2e-05 AT5G43540 69 / 3e-15 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.001G298700 [exp] 44 / 2e-05 AT1G24625 86 / 1e-20 zinc finger protein 7 (.1) Potri.017G116300 [exp] 45 / 3e-05 AT1G68360 99 / 6e-25 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.010G122400 [exp] 45 / 3e-05 AT1G68360 149 / 2e-44 C2H2 and C2HC zinc fingers superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034329 pacid=23175867 polypeptide=Lus10034329 locus=Lus10034329.g ID=Lus10034329.BGIv1.0 annot-version=v1.0 ATGTGCAGGAGGAGGCCTACAAGCTGCAGTAGTGGTAACCCACTGGATCTGAACAACTTGCCAGAGGATCACAACAGTAACACCACCACCAGCATCACGA GTACTCCTACTAACAACAATGGTAGAAGAAGTAACAGAGCAAGAGATCATATTATTCATCGTAATAATGACGCCGCCGGAGATGGTGATGAGGAGGAAGA AGAGGTAGGGAAGGTATACGAGTGTAGGTTTTGCTCCCTCAAGTTCTGCAAATCTCAAGCCCTCGGCGGCCACATGAACCGACACCGTCAAGAAAGAGAG ACGGAGACGCTGAACAGAGCTCGCCAACTGGTCTTGAACAACGACGGCGCCCACCTTCTCGGATATCAATATCCACCGGCGGCTCCAACTTACCATTCCG GAGGAGGGATAATGGGAAGAGATCCGTTATTCAGGCCGCCGCCGCCACCTCCTCTTAATTACCAACCAACGAACCGACTATTCACTTCCGGCGGCGGCGG CGGATCACCAGCTGGCCATCATCATCCGGTGTCGTATCTGTATGCATCTCCACCGCAGACAGTTCATCAGTTACCTCCATACCCTCCGTCGAATCATCTT TACTCGAACAAAGACTACTACATTGGCCACGTCCTGAATCCTGCGGCTGCTCCTCCTCATCACGCCAATAACGGTACTAGTAGTGGCTATATCTGCATTG GTGCACCGGTAAGTACTAGTACCGGCGGAGTAATGGGGTCCACCCACCACCGGGTAGGGTCGGACGGAAGTGGTGGTGGTGGTAGCGATGGCGGATCTTT GGCCAGCAACAACAGTAGTGGCAGCAATCATCATCATCAACGCGCCGAGGACGAGTTTGGTACTGGATTTAACTGGGGAAGGAGCTACGCAGCCTAA
AA sequence Show only first row Show all	>Lus10034329 pacid=23175867 polypeptide=Lus10034329 locus=Lus10034329.g ID=Lus10034329.BGIv1.0 annot-version=v1.0 MCRRRPTSCSSGNPLDLNNLPEDHNSNTTTSITSTPTNNNGRRSNRARDHIIHRNNDAAGDGDEEEEEVGKVYECRFCSLKFCKSQALGGHMNRHRQERE TETLNRARQLVLNNDGAHLLGYQYPPAAPTYHSGGGIMGRDPLFRPPPPPPLNYQPTNRLFTSGGGGGSPAGHHHPVSYLYASPPQTVHQLPPYPPSNHL YSNKDYYIGHVLNPAAAPPHHANNGTSSGYICIGAPVSTSTGGVMGSTHHRVGSDGSGGGGSDGGSLASNNSSGSNHHHQRAEDEFGTGFNWGRSYAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68480	C2H2ZnF	JAG	JAGGED, C2H2 and C2HC zinc fin...		Lus10034329 [exp]	0	1
AT5G53390			O-acyltransferase (WSD1-like) ...		Lus10004008 [exp]	2.6	0.9747
AT1G51460		ABCG13	ATP-binding cassette G13, ABC-...		Lus10000339 [exp]	4.2	0.9697
AT1G37140		MCT1	MEI2 C-terminal RRM only like ...		Lus10018195 [exp]	7.7	0.9608
AT5G16170			Core-2/I-branching beta-1,6-N-...		Lus10037154 [exp]	8.0	0.9204
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Lus10002525 [exp]	8.0	0.9556
AT2G42840		PDF1	protodermal factor 1 (.1)		Lus10007352 [exp]	11.2	0.9565
AT3G63480			ATP binding microtubule motor ...		Lus10035343 [exp]	12.0	0.9481
AT5G61850	LFY	LFY3, LFY	LEAFY 3, floral meristem ident...		Lus10016732 [exp]	12.7	0.9613
AT3G54200			Late embryogenesis abundant (L...		Lus10007649 [exp]	13.4	0.9549
AT5G44940			F-box/RNI-like superfamily pro...		Lus10000726 [exp]	14.1	0.9532

Compare expression of checked genes

Lus10034329 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.