Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25420 190 / 5e-58 Regulator of Vps4 activity in the MVB pathway protein (.1.2.3) AT1G34220 174 / 2e-49 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT4G35730 139 / 2e-37 Regulator of Vps4 activity in the MVB pathway protein (.1) AT2G19710 111 / 7e-27 Regulator of Vps4 activity in the MVB pathway protein (.1) AT4G29440 96 / 2e-21 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT1G13340 58 / 2e-09 Regulator of Vps4 activity in the MVB pathway protein (.1) AT2G14830 54 / 5e-08 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT1G79910 52 / 2e-07 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT1G51900 44 / 9e-05 Regulator of Vps4 activity in the MVB pathway protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041442 [exp] 361 / 1e-125 AT1G25420 270 / 6e-90 Regulator of Vps4 activity in the MVB pathway protein (.1.2.3) Lus10006061 [exp] 172 / 1e-49 AT1G34220 417 / 2e-140 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10028724 [exp] 172 / 2e-49 AT1G34220 417 / 1e-140 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10040542 [exp] 105 / 9e-25 AT2G19710 309 / 2e-89 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10041836 [exp] 96 / 1e-21 AT4G35730 423 / 2e-145 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10028383 [exp] 92 / 2e-20 AT4G35730 415 / 2e-142 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10000978 [exp] 91 / 9e-20 AT2G19710 308 / 6e-89 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10041468 [exp] 74 / 1e-14 AT1G13340 239 / 1e-74 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10034303 [exp] 71 / 2e-13 AT1G13340 243 / 5e-76 Regulator of Vps4 activity in the MVB pathway protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G121300 [exp] 228 / 3e-73 AT1G25420 361 / 3e-125 Regulator of Vps4 activity in the MVB pathway protein (.1.2.3) Potri.013G117100 [exp] 164 / 9e-46 AT1G34220 357 / 2e-115 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.019G087400 [exp] 160 / 9e-45 AT1G34220 357 / 5e-116 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.007G059800 [exp] 154 / 7e-43 AT4G35730 385 / 7e-130 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.006G149800 [exp] 135 / 4e-35 AT2G19710 300 / 3e-86 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.010G124100 [exp] 75 / 2e-16 AT1G25420 71 / 2e-15 Regulator of Vps4 activity in the MVB pathway protein (.1.2.3) Potri.017G113900 [exp] 74 / 8e-15 AT1G13340 211 / 9e-66 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.004G100900 [exp] 65 / 2e-11 AT1G13340 223 / 1e-66 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.004G038600 [exp] 65 / 2e-11 AT2G14830 175 / 3e-48 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.010G127000 [exp] 64 / 4e-11 AT1G13340 268 / 1e-85 Regulator of Vps4 activity in the MVB pathway protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03398 [flax] [poplar] Ist1 Regulator of Vps4 activity in the MVB pathway
Representative CDS sequence Show only first row Show all	>Lus10034330 pacid=23175961 polypeptide=Lus10034330 locus=Lus10034330.g ID=Lus10034330.BGIv1.0 annot-version=v1.0 ATGCGTAAGGAGATAGCACAGTTCTTGCAAGCTGGCCAAGAAGCAATTGCTCGTATTCGTGTGGAACATGTAATACGGGAACAAAATTTATGGGCTGCTT TTGAGATACTGGAGCTTTTCTGCGAGTTTGTCCTTGCTCGAATTCCAATTCTTGATGCTCAGAATCAGTTTGATTTATCGATTCCTTTGAGCTACATCTC AGCTGCTGTGAAGAATGCTGGAGGCATTCAGAAATGGGAGTGCTCCATATGCCACTCAAACTCTTCTTCTATTTTATGTAACTATTTTCCATCTACATCT TCAGAGAATGTCCTGCCGAAGTACGGGAGGCTGTTGCGACGGTTGGCTGTTGCGAGGAGAATATTTTCCTCTCCGGGATGGTCAGAAGGTCCAGATCTAC TACATATTCAGAACTTATTTACTGCTAAATATGGAAAAGAGTTCGTTATGGCTGCTTCAGAACTTCGTCCCGATTCTGGTGTCAACCGTGCAATAATTGA AAAACTAGCAGTTGGTGCTCCTGCGCCAGAAGAAAGACTCAAGGTGTTGAAGGAAATTGCCAGAGAGTACAATTTGGAATGGGATTCTTCTGAAACAGAA GCTGAGCTAAATAAAAGACATGAGGATCTTCTGGCTGGATCGAAGCAGGCAGTAGTCGAGGGATCCCAATCTCAAGTTCCCACTATCCAGACTTCTCCCA GTCCCAGCTCTACAATGAATGGAGCATCATCCGTTAATAGCGGACGAGAAGAACAAAATGTGCGGCCCCCAGTCAAGACTGATGAAATCGTCCCACCGTC GATCAAAAGTCACAATCCGGATCCAATCACCCTGAGTAGACAGGACAGGAATCCACAATCGTCTGATGTTCTGGAGGTAGCTCGAGCTGCTATCGCCACA GCGGAGAGAGCTACTGCAGCAGCCCGTGCTGCCGCTGCCCTTGTGAGCGTTAATTTGAGTTCTCAGAAGCTTCAATGA
AA sequence Show only first row Show all	>Lus10034330 pacid=23175961 polypeptide=Lus10034330 locus=Lus10034330.g ID=Lus10034330.BGIv1.0 annot-version=v1.0 MRKEIAQFLQAGQEAIARIRVEHVIREQNLWAAFEILELFCEFVLARIPILDAQNQFDLSIPLSYISAAVKNAGGIQKWECSICHSNSSSILCNYFPSTS SENVLPKYGRLLRRLAVARRIFSSPGWSEGPDLLHIQNLFTAKYGKEFVMAASELRPDSGVNRAIIEKLAVGAPAPEERLKVLKEIAREYNLEWDSSETE AELNKRHEDLLAGSKQAVVEGSQSQVPTIQTSPSPSSTMNGASSVNSGREEQNVRPPVKTDEIVPPSIKSHNPDPITLSRQDRNPQSSDVLEVARAAIAT AERATAAARAAAALVSVNLSSQKLQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G25420			Regulator of Vps4 activity in ...		Lus10034330 [exp]	0	1
AT4G33950		ATOST1, P44, SR...	SNF1-RELATED PROTEIN KINASE 2....		Lus10012050 [exp]	10.0	0.9039
AT3G03610			ELMO/CED-12 family protein (.1...		Lus10009523 [exp]	18.3	0.8907
AT3G54480		SKP5, SKIP5	SKP1/ASK-interacting protein 5...		Lus10024168 [exp]	26.2	0.8847
AT5G13240			transcription regulators (.1)		Lus10013491 [exp]	33.5	0.8634
AT2G20120		COV1	CONTINUOUS VASCULAR RING, Prot...		Lus10011099 [exp]	34.6	0.8790
AT3G22260			Cysteine proteinases superfami...		Lus10010459 [exp]	37.5	0.8555
AT4G36400		D2HGDH	D-2-hydroxyglutarate dehydroge...		Lus10028342 [exp]	48.7	0.8635
AT3G01040		GAUT13	galacturonosyltransferase 13 (...		Lus10015379 [exp]	52.2	0.8686
AT2G26070		RTE1	REVERSION-TO-ETHYLENE SENSITIV...		Lus10030001 [exp]	58.0	0.8683
AT1G15030			Protein of unknown function (D...		Lus10031598 [exp]	60.7	0.8534

Compare expression of checked genes

Lus10034330 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.