Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77420 500 / 4e-178 alpha/beta-Hydrolases superfamily protein (.1) AT5G16120 410 / 6e-143 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G39420 263 / 5e-86 alpha/beta-Hydrolases superfamily protein (.1) AT2G39400 261 / 3e-85 alpha/beta-Hydrolases superfamily protein (.1) AT2G39410 256 / 4e-83 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G62860 254 / 8e-82 alpha/beta-Hydrolases superfamily protein (.1) AT2G47630 249 / 4e-80 alpha/beta-Hydrolases superfamily protein (.1) AT1G11090 245 / 1e-78 alpha/beta-Hydrolases superfamily protein (.1) AT3G55180 244 / 2e-78 alpha/beta-Hydrolases superfamily protein (.1) AT3G55190 226 / 2e-71 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041441 [exp] 755 / 0 AT1G77420 496 / 2e-176 alpha/beta-Hydrolases superfamily protein (.1) Lus10017601 [exp] 399 / 2e-138 AT5G16120 514 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10033561 [exp] 387 / 4e-133 AT5G16120 441 / 6e-155 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10009169 [exp] 364 / 5e-125 AT5G16120 490 / 2e-175 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10017600 [exp] 356 / 2e-122 AT5G16120 409 / 5e-144 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10028475 [exp] 257 / 2e-84 AT5G16120 338 / 7e-117 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10040328 [exp] 258 / 1e-83 AT2G39420 468 / 2e-167 alpha/beta-Hydrolases superfamily protein (.1) Lus10007877 [exp] 257 / 9e-83 AT3G62860 501 / 2e-179 alpha/beta-Hydrolases superfamily protein (.1) Lus10023448 [exp] 256 / 2e-79 AT2G39420 459 / 2e-159 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G124000 [exp] 542 / 0 AT1G77420 510 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.017G114800 [exp] 422 / 5e-147 AT5G16120 520 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.010G212200 [exp] 255 / 1e-82 AT2G39420 462 / 4e-165 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G049000 [exp] 249 / 2e-80 AT2G39420 479 / 8e-172 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G129000 [exp] 249 / 6e-80 AT3G62860 499 / 5e-179 alpha/beta-Hydrolases superfamily protein (.1) Potri.011G046500 [exp] 244 / 2e-78 AT1G11090 461 / 1e-164 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G204200 [exp] 243 / 2e-77 AT2G47630 493 / 2e-176 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G040000 [exp] 189 / 9e-57 AT5G19290 507 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G222300 [exp] 183 / 1e-54 AT5G19290 472 / 8e-169 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G059200 [exp] 176 / 5e-52 AT1G52760 560 / 0.0 lysophospholipase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF12146 [flax] [poplar] Hydrolase_4 Serine aminopeptidase, S33
Representative CDS sequence Show only first row Show all	>Lus10034331 pacid=23175868 polypeptide=Lus10034331 locus=Lus10034331.g ID=Lus10034331.BGIv1.0 annot-version=v1.0 ATGAATTCAAAAATGATTTCACACCAAAGCAGCACCCATTATTCACTTGGATCAAAGGCTACTCGAGGACATCAACAGCAGCCAGTCGTGACGGCCACTT TGGCGATGAAGAAGAAGCAGATAGAGGGAGTAACCAAAGACCTCAACTTGATTGCTTCCCAGAACTTGGATCAAGCTCCCACCAGGAGACTCGTTCGTTC CGCTTTCACTCGGCTTCAGCTACAACTGGATCACCCTCTTTACAAGTTGGCTCCTCCAGGGATACGAACAGAGGAGTGGTACGAGATAAACTACAAGGGT CTGGAAGTTTTCTGCAAAAGCTGGATGCCAGGAGCAGGTGTCCGAATCAAAGGTGTAGTGTGTTTCTGCCATGGTTATGGTGACACCTGCACCTTCTTCT TTGAAGGGATTGCAAGCCGAATTGCTGCGTCTGGGTATGGTGTGTATGCTATCGACCACCCAGGTTTTGGTCTGTCTGAAGGATTGCACGGTTACATTGC GAATTTTGATGACTTGGTTGACAATGCCATTGAACAGTTTACTAAAATTAAAGAAAGACCGGAGTTACGCGGTTTGCCCAAGTTCATATTGGGGCAGTCC ATGGGTGGAGCTGTTAGTCTCAAAGTTCATCTCAAGGAGCCGTCTGAATGGGATGGCGTAATCCTTGTAGCGCCCATGTGTAGAATCTCAGATGAGGTGA AGCCTCCTGCTCCAGTTTTGAAGGTATTGACCTGCATGGCTAAATATTTACCAAAGGCAAAGCTTATACCTGGGACAGATTTAGCAGAGCTCGCCTTCAG AGACCCGACCAAACGGAAAATGGCGGAGTACAATGTGATTTGCTACAGCGACCGAGTGAGATTACAAACCGCAGTAGAGCTACTAAAGGCTACTGAAGAA ATTGAGGCCCAAGTTAACAAGATATCAGCTCCATTGCTGATTCTACACGGTGCTGCTGATAAAATCACGGATCCTAAGGTGAGCCAGTTTCTGTATGAGA ACGCTGCGAGCGAGGATAAGACATTGAAGCTTTATGAAGATGGGTTTCACTCAATTCTTGAAGGGGAACCAGATGACAGGATCTTTGCTGTCTTCGATGA TATCATAACCTGGCTCGATAACAGGTCCTCAAAACTACATGGACTTGTGAGCAGTACTCACTGA
AA sequence Show only first row Show all	>Lus10034331 pacid=23175868 polypeptide=Lus10034331 locus=Lus10034331.g ID=Lus10034331.BGIv1.0 annot-version=v1.0 MNSKMISHQSSTHYSLGSKATRGHQQQPVVTATLAMKKKQIEGVTKDLNLIASQNLDQAPTRRLVRSAFTRLQLQLDHPLYKLAPPGIRTEEWYEINYKG LEVFCKSWMPGAGVRIKGVVCFCHGYGDTCTFFFEGIASRIAASGYGVYAIDHPGFGLSEGLHGYIANFDDLVDNAIEQFTKIKERPELRGLPKFILGQS MGGAVSLKVHLKEPSEWDGVILVAPMCRISDEVKPPAPVLKVLTCMAKYLPKAKLIPGTDLAELAFRDPTKRKMAEYNVICYSDRVRLQTAVELLKATEE IEAQVNKISAPLLILHGAADKITDPKVSQFLYENAASEDKTLKLYEDGFHSILEGEPDDRIFAVFDDIITWLDNRSSKLHGLVSSTH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77420			alpha/beta-Hydrolases superfam...		Lus10034331 [exp]	0	1
AT1G77420			alpha/beta-Hydrolases superfam...		Lus10041441 [exp]	1.0	0.9081
AT1G21630			Calcium-binding EF hand family...		Lus10035982 [exp]	1.4	0.8848
AT1G67910			unknown protein		Lus10026701 [exp]	4.9	0.8377
AT4G08900		ARGAH1	arginine amidohydrolase 1, arg...		Lus10000795 [exp]	6.8	0.8265
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10015237 [exp]	9.3	0.8841
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10039562 [exp]	10.4	0.8468
AT1G10650			SBP (S-ribonuclease binding pr...		Lus10013027 [exp]	11.0	0.8478
AT4G17830			Peptidase M20/M25/M40 family p...		Lus10040090 [exp]	11.8	0.8772
					Lus10036759 [exp]	16.1	0.8116
AT5G62740		AtHIR4, ATHIR1	hypersensitive induced reactio...		Lus10033099 [exp]	17.3	0.8719

Compare expression of checked genes

Lus10034331 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.