Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68460 282 / 1e-92 ATIPT1 Arabidopsis thaliana isopentenyltransferase 1, isopentenyltransferase 1 (.1) AT3G19160 272 / 4e-89 PGA22, ATIPT8 isopentenyltransferase 8, ATP/ADP isopentenyltransferases (.1) AT4G24650 270 / 1e-88 ATIPT4 ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 4, isopentenyltransferase 4 (.1) AT1G25410 252 / 3e-81 ATIPT6 ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 6, isopentenyltransferase 6 (.1) AT3G63110 216 / 4e-67 ATIPT3 isopentenyltransferase 3 (.1) AT5G19040 213 / 2e-66 ATIPT5 Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, isopentenyltransferase 5 (.1) AT3G23630 209 / 1e-64 ATIPT7 ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 7, isopentenyltransferase 7 (.1) AT2G27760 112 / 4e-27 IPPT, ATIPT2 tRNAisopentenyltransferase 2 (.1) AT5G20040 84 / 2e-17 ATIPT9 ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 9, isopentenyltransferase 9 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034334 [exp] 328 / 2e-111 AT1G68460 267 / 3e-88 Arabidopsis thaliana isopentenyltransferase 1, isopentenyltransferase 1 (.1) Lus10034333 [exp] 324 / 4e-109 AT1G68460 258 / 1e-83 Arabidopsis thaliana isopentenyltransferase 1, isopentenyltransferase 1 (.1) Lus10028015 [exp] 214 / 3e-66 AT3G63110 327 / 3e-111 isopentenyltransferase 3 (.1) Lus10012372 [exp] 210 / 7e-65 AT3G63110 332 / 5e-113 isopentenyltransferase 3 (.1) Lus10034025 [exp] 204 / 6e-63 AT5G19040 378 / 7e-132 Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, isopentenyltransferase 5 (.1) Lus10004428 [exp] 200 / 4e-61 AT5G19040 372 / 2e-129 Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, isopentenyltransferase 5 (.1) Lus10006281 [exp] 140 / 5e-37 AT2G27760 493 / 2e-172 tRNAisopentenyltransferase 2 (.1) Lus10041440 [exp] 124 / 1e-34 AT1G68460 77 / 9e-18 Arabidopsis thaliana isopentenyltransferase 1, isopentenyltransferase 1 (.1) Lus10020566 [exp] 132 / 4e-34 AT2G27760 491 / 1e-171 tRNAisopentenyltransferase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G123801 [exp] 337 / 4e-114 AT1G68460 338 / 4e-115 Arabidopsis thaliana isopentenyltransferase 1, isopentenyltransferase 1 (.1) Potri.008G121500 [exp] 337 / 7e-114 AT1G68460 348 / 6e-119 Arabidopsis thaliana isopentenyltransferase 1, isopentenyltransferase 1 (.1) Potri.014G139300 [exp] 221 / 3e-69 AT3G63110 356 / 7e-123 isopentenyltransferase 3 (.1) Potri.010G030500 [exp] 213 / 4e-66 AT5G19040 365 / 1e-126 Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, isopentenyltransferase 5 (.1) Potri.008G202200 [exp] 209 / 7e-65 AT5G19040 396 / 9e-139 Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, isopentenyltransferase 5 (.1) Potri.004G150900 [exp] 184 / 6e-55 AT5G19040 257 / 6e-84 Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, isopentenyltransferase 5 (.1) Potri.008G033300 [exp] 163 / 1e-47 AT5G19040 235 / 3e-76 Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, isopentenyltransferase 5 (.1) Potri.009G147600 [exp] 122 / 2e-30 AT2G27760 544 / 0.0 tRNAisopentenyltransferase 2 (.1) Potri.001G376600 [exp] 83 / 3e-17 AT5G20040 568 / 0.0 ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 9, isopentenyltransferase 9 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF01715 [flax] [poplar] IPPT IPP transferase
Representative CDS sequence Show only first row Show all	>Lus10034332 pacid=23175973 polypeptide=Lus10034332 locus=Lus10034332.g ID=Lus10034332.BGIv1.0 annot-version=v1.0 ATGAAGTTCCTTCATTTCATCCCTTCCCATTCCACCCTTCTCCCTCCTTTACCCATTTTCAATCCCTCTACTTCCCGCCGCCTTCGTCCTCCCCCCATCC GCCTCCTCCGAATGGACTACTCATCATCATCTTCCTCCGCCTCTTCTTCTTCTTCTTCTTCGAGCGAGCTGGAGAGCCGCCGACGTCAAATGGGTAAGGT CCTCGTCATCATGGGAGCCACCGGCTGCGGAAAATCCAAGTTATCCGTCGATCTCTCCACCACCTGCGGCTTCCGCGCAGAAATCATCAACTCCGACAAA ATGCAAGTCTACAGAGGCCTCGACATCACCACCAATAAAATCACCGTCCAAGAGCAGCGAGGAGTCCCGCACCATCTACTCGGTGAGATCGACCCTTCCG CCGGAGACTTCACCGCCGCTCAATTCCGCATCGCCGCCGGCGATGCCGTTTCCGACATTTCGTCCAGGGGGAGGCTACCCGTACTGGTCGGGGGGTCCAA TACATTCATCCACGCTCTCCTCGTTGACCGGTACCTCCCCGGTTCCGACGTCTTCTACGGGTCGACAATGGAGGATCGGATCTCTTCCGAGCTAAGGTAC CAATGCTGCTTTGTGTGGCTTGATGTCTCCTTCCCCGTTCTGTGCGATTACCTCTGCCGGCGGGTGGACGAAATGCTGGAATCCGGGATGTTTGAGGAGC TGGCGGAGTTTTACTCGTCGGAGTCATGGTCAAGTCAGACCGGATTGCTGAAAGCGATTGGGGTGCCTGAGTTGGAGCGCTATTTTCAACTACTCGGGAA AAATGCTAATAATAATTCCAAAAATAACAAGAAAAAATGGTGGGGCTCGGATGCAGTACGGAGGAGCGTATACGAGGAGGCGGTGAGGGCGATCAAGGAG AACACGTGTCGGCTAGCGGAGAGGCAGATGGGAAAAATATTGCGGCTGGAAAAGGGTGGGTGGGACCTACAGAGAGTGGATGCAACAGAAGCGTTCAAGG AATTGATGAGATCGGAGGAAGAAGAGGAGGTAGTGACGTCGTCCTCAGTGGGATCAGCCGGAGGTGGACGAAAGAAGAGGAGGCGGGGGAAGTGGGTAGA GGTGTGGGAGAGAGAGGTGGTGGAGCCAAGCGTGAAGATTGTGAAGCAGTTCTTGGATGAGTAG
AA sequence Show only first row Show all	>Lus10034332 pacid=23175973 polypeptide=Lus10034332 locus=Lus10034332.g ID=Lus10034332.BGIv1.0 annot-version=v1.0 MKFLHFIPSHSTLLPPLPIFNPSTSRRLRPPPIRLLRMDYSSSSSSASSSSSSSSELESRRRQMGKVLVIMGATGCGKSKLSVDLSTTCGFRAEIINSDK MQVYRGLDITTNKITVQEQRGVPHHLLGEIDPSAGDFTAAQFRIAAGDAVSDISSRGRLPVLVGGSNTFIHALLVDRYLPGSDVFYGSTMEDRISSELRY QCCFVWLDVSFPVLCDYLCRRVDEMLESGMFEELAEFYSSESWSSQTGLLKAIGVPELERYFQLLGKNANNNSKNNKKKWWGSDAVRRSVYEEAVRAIKE NTCRLAERQMGKILRLEKGGWDLQRVDATEAFKELMRSEEEEEVVTSSSVGSAGGGRKKRRRGKWVEVWEREVVEPSVKIVKQFLDE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68460		ATIPT1	Arabidopsis thaliana isopenten...		Lus10034332 [exp]	0	1
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10016353 [exp]	15.6	0.7792
AT1G51190	AP2_ERF	PLT2	PLETHORA 2, Integrase-type DNA...		Lus10031260 [exp]	15.7	0.8486
AT5G39820	NAC	ANAC094	NAC domain containing protein ...		Lus10030478 [exp]	19.0	0.8383
AT3G20840	AP2_ERF	PLT1	PLETHORA 1, Integrase-type DNA...		Lus10031831 [exp]	24.2	0.8297
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Lus10032857 [exp]	29.7	0.8220
AT2G43870			Pectin lyase-like superfamily ...		Lus10002123 [exp]	51.4	0.7460
AT5G18080		SAUR24	small auxin up RNA 24, SAUR-li...		Lus10039962 [exp]	53.3	0.7530
AT5G05340			Peroxidase superfamily protein...		Lus10000625 [exp]	55.3	0.7656
AT1G65680		ATHEXPBETA1.4, ...	expansin B2 (.1)		Lus10038933 [exp]	56.9	0.7132
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Lus10012478 [exp]	58.1	0.7634

Compare expression of checked genes

Lus10034332 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.