Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68460 257 / 2e-83 ATIPT1 Arabidopsis thaliana isopentenyltransferase 1, isopentenyltransferase 1 (.1) AT3G19160 252 / 1e-81 PGA22, ATIPT8 isopentenyltransferase 8, ATP/ADP isopentenyltransferases (.1) AT1G25410 241 / 3e-77 ATIPT6 ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 6, isopentenyltransferase 6 (.1) AT4G24650 239 / 1e-76 ATIPT4 ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 4, isopentenyltransferase 4 (.1) AT5G19040 212 / 3e-66 ATIPT5 Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, isopentenyltransferase 5 (.1) AT3G23630 206 / 5e-64 ATIPT7 ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 7, isopentenyltransferase 7 (.1) AT3G63110 205 / 2e-63 ATIPT3 isopentenyltransferase 3 (.1) AT2G27760 99 / 1e-22 IPPT, ATIPT2 tRNAisopentenyltransferase 2 (.1) AT5G20040 76 / 8e-15 ATIPT9 ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 9, isopentenyltransferase 9 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034334 [exp] 503 / 1e-180 AT1G68460 267 / 3e-88 Arabidopsis thaliana isopentenyltransferase 1, isopentenyltransferase 1 (.1) Lus10034332 [exp] 335 / 2e-113 AT1G68460 304 / 3e-101 Arabidopsis thaliana isopentenyltransferase 1, isopentenyltransferase 1 (.1) Lus10028015 [exp] 205 / 2e-63 AT3G63110 327 / 3e-111 isopentenyltransferase 3 (.1) Lus10012372 [exp] 203 / 2e-62 AT3G63110 332 / 5e-113 isopentenyltransferase 3 (.1) Lus10004428 [exp] 198 / 6e-61 AT5G19040 372 / 2e-129 Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, isopentenyltransferase 5 (.1) Lus10034025 [exp] 196 / 6e-60 AT5G19040 378 / 7e-132 Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, isopentenyltransferase 5 (.1) Lus10041439 [exp] 160 / 3e-49 AT3G19160 62 / 2e-12 isopentenyltransferase 8, ATP/ADP isopentenyltransferases (.1) Lus10020566 [exp] 167 / 3e-47 AT2G27760 491 / 1e-171 tRNAisopentenyltransferase 2 (.1) Lus10006281 [exp] 166 / 4e-47 AT2G27760 493 / 2e-172 tRNAisopentenyltransferase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G121500 [exp] 287 / 5e-95 AT1G68460 348 / 6e-119 Arabidopsis thaliana isopentenyltransferase 1, isopentenyltransferase 1 (.1) Potri.010G123801 [exp] 282 / 4e-93 AT1G68460 338 / 4e-115 Arabidopsis thaliana isopentenyltransferase 1, isopentenyltransferase 1 (.1) Potri.014G139300 [exp] 214 / 4e-67 AT3G63110 356 / 7e-123 isopentenyltransferase 3 (.1) Potri.010G030500 [exp] 214 / 5e-67 AT5G19040 365 / 1e-126 Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, isopentenyltransferase 5 (.1) Potri.008G202200 [exp] 211 / 6e-66 AT5G19040 396 / 9e-139 Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, isopentenyltransferase 5 (.1) Potri.004G150900 [exp] 194 / 4e-59 AT5G19040 257 / 6e-84 Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, isopentenyltransferase 5 (.1) Potri.008G033300 [exp] 172 / 3e-51 AT5G19040 235 / 3e-76 Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, isopentenyltransferase 5 (.1) Potri.009G147600 [exp] 102 / 7e-24 AT2G27760 544 / 0.0 tRNAisopentenyltransferase 2 (.1) Potri.001G376600 [exp] 70 / 4e-13 AT5G20040 568 / 0.0 ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 9, isopentenyltransferase 9 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF01715 [flax] [poplar] IPPT IPP transferase
Representative CDS sequence Show only first row Show all	>Lus10034333 pacid=23175878 polypeptide=Lus10034333 locus=Lus10034333.g ID=Lus10034333.BGIv1.0 annot-version=v1.0 ATGTCGATGCTCCTTCATTTTCCGGCCGCGGCCACTCCTTCTCATTCCTCTTTCCTCCCAACGTCTCCTCTTACAATGACCACCCGACGCTGTCTCCTTG GCCGGTCGCCTATGATCCGGATGGACTCTTCATCCTTCTCACTATCTTCATCTTCTTCGTCGTCATTGTTGACGACCGAGGTTGATGAGGATAGCGCCAT CCGGAAGTTGGAAAAGGTGTTGGTGGTCATGGGGACCACCGGCACCGGCAAGTCAAAGCTGTCAGTTGATCTGTCAACCGTCAGCGGGTTCAAAACCGAG ATAGTCAGCTGTGACAAAATCCACATCTACAAAGGGCTGGACATCACCACCAACAAGATCACGCCCGAGGAGCAGAAAGGGGTCCCACACCACTTCATCG GGGAGTACGAAGGCTACTTCACCGCTCACCAATTCCGCCTCGCCGGACAGACGGCGGTCTCCGACATCTCCTCCAGAGGGAAGCTCCCCGTCGTCGTTGG CTGCACCAACTCCTTCATCCACGCCCTCCTCGCTGACCGCTTTCACCCTGGCTTGGACGCCTTCGCCGGGACTGACGAGGATCAGATCGCCCGTAAGCTG AGGTACGATGCATGCTTCATCTGGCTGGACGTGTCGTTTCCTGTTCTGTTCAAGTACCTGCGCCGCCGGGTGGACAAGCTTCTGGAGGCCGGGATGGTGG AGGAGCTGGCCGAGTTCAACTCGTCCGAGTGGGCGGTGAATCAGAGCGGGCTGAGGGAGGCGATATGCGTGACGGAGTTCGAGGAGTATTTCGAGCTGGT GAAGAACGGTAACGCCTCTGATGCGGAGAAGAGGAGGGTGTACCAGAAGGCCGTGAAGGAGATCAAGGACAACACGTGCCGGCTGGCGGAGAGGCAGATG GAGAAGATAATGAGGCTTAAGGGTTGTGGATGGGAGCTTCACCGAATCGACGCGACCAACGCGGTCAAGGTGACGATGATGTCGCCGGTGTTGGGCGAGG AGGTGTGGGAGAAGGAGGTGCTCGAGCCAAGCGCCAAGATTGTCAAGCGCTTCTTGGATGCATAA
AA sequence Show only first row Show all	>Lus10034333 pacid=23175878 polypeptide=Lus10034333 locus=Lus10034333.g ID=Lus10034333.BGIv1.0 annot-version=v1.0 MSMLLHFPAAATPSHSSFLPTSPLTMTTRRCLLGRSPMIRMDSSSFSLSSSSSSSLLTTEVDEDSAIRKLEKVLVVMGTTGTGKSKLSVDLSTVSGFKTE IVSCDKIHIYKGLDITTNKITPEEQKGVPHHFIGEYEGYFTAHQFRLAGQTAVSDISSRGKLPVVVGCTNSFIHALLADRFHPGLDAFAGTDEDQIARKL RYDACFIWLDVSFPVLFKYLRRRVDKLLEAGMVEELAEFNSSEWAVNQSGLREAICVTEFEEYFELVKNGNASDAEKRRVYQKAVKEIKDNTCRLAERQM EKIMRLKGCGWELHRIDATNAVKVTMMSPVLGEEVWEKEVLEPSAKIVKRFLDA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68460		ATIPT1	Arabidopsis thaliana isopenten...		Lus10034333 [exp]	0	1
AT5G16990			Zinc-binding dehydrogenase fam...		Lus10007853 [exp]	4.0	0.7647
AT1G03890			RmlC-like cupins superfamily p...		Lus10033893 [exp]	8.1	0.7076
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10018785 [exp]	14.5	0.7006
					Lus10028940 [exp]	18.0	0.6953
					Lus10033191 [exp]	19.7	0.6823
AT4G15480		UGT84A1	UDP-Glycosyltransferase superf...		Lus10002810 [exp]	22.6	0.6349
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10031172 [exp]	38.1	0.6117
AT2G34440	MADS	AGL29	AGAMOUS-like 29 (.1)		Lus10011787 [exp]	47.1	0.5940
AT3G52820		ATPAP22, PAP22	purple acid phosphatase 22 (.1...		Lus10017059 [exp]	52.5	0.5581
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10013923 [exp]	56.1	0.5863

Compare expression of checked genes

Lus10034333 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.