Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19160 247 / 2e-80 PGA22, ATIPT8 isopentenyltransferase 8, ATP/ADP isopentenyltransferases (.1) AT1G68460 247 / 4e-80 ATIPT1 Arabidopsis thaliana isopentenyltransferase 1, isopentenyltransferase 1 (.1) AT4G24650 229 / 2e-73 ATIPT4 ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 4, isopentenyltransferase 4 (.1) AT1G25410 219 / 2e-69 ATIPT6 ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 6, isopentenyltransferase 6 (.1) AT5G19040 197 / 4e-61 ATIPT5 Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, isopentenyltransferase 5 (.1) AT3G23630 196 / 2e-60 ATIPT7 ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 7, isopentenyltransferase 7 (.1) AT3G63110 189 / 5e-58 ATIPT3 isopentenyltransferase 3 (.1) AT2G27760 101 / 6e-24 IPPT, ATIPT2 tRNAisopentenyltransferase 2 (.1) AT5G20040 74 / 2e-14 ATIPT9 ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 9, isopentenyltransferase 9 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034333 [exp] 480 / 1e-171 AT1G68460 258 / 1e-83 Arabidopsis thaliana isopentenyltransferase 1, isopentenyltransferase 1 (.1) Lus10034332 [exp] 306 / 8e-103 AT1G68460 304 / 3e-101 Arabidopsis thaliana isopentenyltransferase 1, isopentenyltransferase 1 (.1) Lus10028015 [exp] 206 / 4e-64 AT3G63110 327 / 3e-111 isopentenyltransferase 3 (.1) Lus10012372 [exp] 198 / 4e-61 AT3G63110 332 / 5e-113 isopentenyltransferase 3 (.1) Lus10004428 [exp] 186 / 7e-57 AT5G19040 372 / 2e-129 Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, isopentenyltransferase 5 (.1) Lus10034025 [exp] 184 / 8e-56 AT5G19040 378 / 7e-132 Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, isopentenyltransferase 5 (.1) Lus10006281 [exp] 163 / 2e-46 AT2G27760 493 / 2e-172 tRNAisopentenyltransferase 2 (.1) Lus10020566 [exp] 160 / 2e-45 AT2G27760 491 / 1e-171 tRNAisopentenyltransferase 2 (.1) Lus10041439 [exp] 128 / 7e-37 AT3G19160 62 / 2e-12 isopentenyltransferase 8, ATP/ADP isopentenyltransferases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G121500 [exp] 282 / 1e-93 AT1G68460 348 / 6e-119 Arabidopsis thaliana isopentenyltransferase 1, isopentenyltransferase 1 (.1) Potri.010G123801 [exp] 276 / 3e-91 AT1G68460 338 / 4e-115 Arabidopsis thaliana isopentenyltransferase 1, isopentenyltransferase 1 (.1) Potri.014G139300 [exp] 204 / 8e-64 AT3G63110 356 / 7e-123 isopentenyltransferase 3 (.1) Potri.010G030500 [exp] 196 / 1e-60 AT5G19040 365 / 1e-126 Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, isopentenyltransferase 5 (.1) Potri.008G202200 [exp] 196 / 2e-60 AT5G19040 396 / 9e-139 Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, isopentenyltransferase 5 (.1) Potri.004G150900 [exp] 179 / 5e-54 AT5G19040 257 / 6e-84 Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, isopentenyltransferase 5 (.1) Potri.008G033300 [exp] 164 / 1e-48 AT5G19040 235 / 3e-76 Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, isopentenyltransferase 5 (.1) Potri.009G147600 [exp] 137 / 2e-36 AT2G27760 544 / 0.0 tRNAisopentenyltransferase 2 (.1) Potri.001G376600 [exp] 74 / 2e-14 AT5G20040 568 / 0.0 ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 9, isopentenyltransferase 9 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF01715 [flax] [poplar] IPPT IPP transferase
Representative CDS sequence Show only first row Show all	>Lus10034334 pacid=23176125 polypeptide=Lus10034334 locus=Lus10034334.g ID=Lus10034334.BGIv1.0 annot-version=v1.0 ATGAACCGGATCGGATCTTCACCTGTAACGGCTTATAGTTCCATTTCTTCGTTGTCGTCATTGCACATCAACACCTTCTCCAGCCAGCAGCAAGAGAAAG TGCTGGTGATAATGGGGACAACCGGGAGCGGCAAGTCAAAGCTTTCGGTTGACCTCTCGACCACCAGCGGGTTACAGACCGAGATAGTCAACTGCGACAA AATCCAAGTCTACAAAGGGCTGGACATCAGCACCAATAAGATCACGCCCGAGGAGCAAAAGGGGGTCCCACACCACCTCATCGGGGAATTCGAAGGCTAC TTCACCAGTCACCAGTTCCGCCTAGCCTCCCAGGCAGTAATCTCCGACATCTCGTTGAGAGGCAAGCTCCCGGTCGTTGTTGGCTGCTCCAACTCCTTCA TCCACGCCCTCGTTGCCGACCGCTTCCACCCGGGACTCCATGCCTTCGTCGGGGCGGACGAGAATAGGATCGCGCGTAAGCTGAGATACGACGCATGCTT CATCTGGTTGGACGTGTCGTTCCTGGTTCTGTTTGAGTACCTGCACCGCCGGGTGGACAAGATGCTGGAGGCCGGGATGATGGAGGAGCTGGAGGAGTTC TACTCGTCCGAGTGGGCGGCGAGTCAGACCGGGTTGAGGGAAGCGATATGTGTGCCGGAATTCGAGGAGTATTTCGAGCTCGTGAAGAGTGGTAACGCCT CTGATGCGATGAAGAGGAGGGTGTACGAGGAGGCAGTGAGGGAGATCAAGGACAACACGTGCCGGCTAGCGAAGAGGCAGATGGAGAAGATTCTGAGGCT TAAGTGTTGCGGATGGGACCTTCACAGAGTGGACGCGACCAGAGCAGTCGAGGCGACGATGGAATCGCCGGTGTTGGGGGAAGAGGTGTGGGAGAAGGAG GTGCTGGAGCCAAGCGCCGAGATTGTCAAGCGTTTCTTGGATGCATAG
AA sequence Show only first row Show all	>Lus10034334 pacid=23176125 polypeptide=Lus10034334 locus=Lus10034334.g ID=Lus10034334.BGIv1.0 annot-version=v1.0 MNRIGSSPVTAYSSISSLSSLHINTFSSQQQEKVLVIMGTTGSGKSKLSVDLSTTSGLQTEIVNCDKIQVYKGLDISTNKITPEEQKGVPHHLIGEFEGY FTSHQFRLASQAVISDISLRGKLPVVVGCSNSFIHALVADRFHPGLHAFVGADENRIARKLRYDACFIWLDVSFLVLFEYLHRRVDKMLEAGMMEELEEF YSSEWAASQTGLREAICVPEFEEYFELVKSGNASDAMKRRVYEEAVREIKDNTCRLAKRQMEKILRLKCCGWDLHRVDATRAVEATMESPVLGEEVWEKE VLEPSAEIVKRFLDA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68460		ATIPT1	Arabidopsis thaliana isopenten...		Lus10034334 [exp]	0	1
					Lus10016963 [exp]	1.7	0.8445
AT3G07840			Pectin lyase-like superfamily ...		Lus10009605 [exp]	3.5	0.7794
AT4G35160			O-methyltransferase family pro...		Lus10007035 [exp]	4.6	0.7955
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10024367 [exp]	5.2	0.7199
AT3G16910		AAE7, ACN1	ACETATE NON-UTILIZING 1, acyl-...		Lus10016861 [exp]	5.5	0.7664
					Lus10016158 [exp]	5.9	0.7730
AT1G17800		AtENODL22	early nodulin-like protein 22 ...		Lus10020984 [exp]	6.8	0.8269
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Lus10031759 [exp]	6.9	0.6515
AT4G22285			Ubiquitin C-terminal hydrolase...		Lus10035547 [exp]	9.8	0.7428
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10001042 [exp]	11.0	0.7194

Compare expression of checked genes

Lus10034334 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.