Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25400 100 / 2e-24 unknown protein AT1G68440 89 / 3e-20 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041438 [exp] 396 / 2e-139 AT1G25400 142 / 3e-40 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G123600 [exp] 101 / 1e-24 AT1G25400 141 / 1e-39 unknown protein Potri.008G121700 [exp] 84 / 2e-18 AT1G25400 112 / 1e-28 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034335 pacid=23176054 polypeptide=Lus10034335 locus=Lus10034335.g ID=Lus10034335.BGIv1.0 annot-version=v1.0 ATGGAGGTTCCGGTGATCAATAGAATAGGCGACTTCGAAGGCGGAATCGCCTCTCTGCAAAACCCATCTGTATTTTCTTCCCGAGCTTTTGCTTCTTCTG GAATCGGAAGAATTTACCAGGCTTACAGTTTCTGGAAATGGGGCACTCTGTTTCTCGCAGTATTAGTCGCCTACTTCACCACAATCCTCACCCGCATTCG AGTCCTGCTCTTTCGGCTTCACAAGACCCACCCGATTTCTTCTGAGACACTTCTTGTCCAGGAAGAGTCAGATTACGACACAGATTCCGATTACGACACC GAATCCGATGATGAAGACGAAGACGAGGAAGAAGATGAAGAGGACGAGGGTTCGTCTACTGATGACGATTTTAGCTTCGGAGGCGGGTCGAATTTCGGGT TGAGGCTCCGGCGGCGGAGCAGCAGCATTGGGGATTTCTTCTCGTGGCCGGAATTCGCCAACGGGACGAGTAGTGTAGTGAAGATGTGGGACAATTTCGG GTTGGGGTTGGATCTGAATCTCGACGGCGGAGGAGACCAGAATTCGCGCTCGATTTTCGGAGGCGGCGCCGAGATCCTTGGGGCGCCGGCGGTCATTATT TCGGCGGAGGCGAACATGGCTGGGAACTTGTTGAGGGTGTGGGACAGTCGGGTCGGGAGCCGGATCCCGCAGATGTTGGCGGAGTGGCGGCCGAAGCTAG GGAAGATGGTCAGCGTCAACGCCGGATTTTTGGAGAAGATTAGCGGTGGGGAGTTAACGGTGGCGGATATGAGAAAAGTCAGCTGCTCATCGGTAGTTGG TAGCGTGACGGAATCTGAGACGGCGGACACATGGTGGGACGCGGACGCCGTTAAAGGTGGAGACGACGAGGACGAGTCAACTGAGTGTGACTCGTTTATG CGACGCGGTTAG
AA sequence Show only first row Show all	>Lus10034335 pacid=23176054 polypeptide=Lus10034335 locus=Lus10034335.g ID=Lus10034335.BGIv1.0 annot-version=v1.0 MEVPVINRIGDFEGGIASLQNPSVFSSRAFASSGIGRIYQAYSFWKWGTLFLAVLVAYFTTILTRIRVLLFRLHKTHPISSETLLVQEESDYDTDSDYDT ESDDEDEDEEEDEEDEGSSTDDDFSFGGGSNFGLRLRRRSSSIGDFFSWPEFANGTSSVVKMWDNFGLGLDLNLDGGGDQNSRSIFGGGAEILGAPAVII SAEANMAGNLLRVWDSRVGSRIPQMLAEWRPKLGKMVSVNAGFLEKISGGELTVADMRKVSCSSVVGSVTESETADTWWDADAVKGGDDEDESTECDSFM RRG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G25400			unknown protein		Lus10034335 [exp]	0	1
AT5G66590			CAP (Cysteine-rich secretory p...		Lus10022481 [exp]	2.0	0.8468
AT2G19760		PRF1, PFN1	profilin 1 (.1)		Lus10011138 [exp]	3.0	0.8510
AT5G26751		ATSK11 ,SK 11	ARABIDOPSIS THALIANA SHAGGY-RE...		Lus10031440 [exp]	8.8	0.8454
AT2G39570		ACR9	ACT domain repeats 9, ACT doma...		Lus10001702 [exp]	10.8	0.7221
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10029123 [exp]	14.1	0.8235
AT5G19450		CPK8, CDPK19	calcium-dependent protein kina...		Lus10027361 [exp]	16.9	0.7791
AT1G54320			LEM3 (ligand-effect modulator ...		Lus10001834 [exp]	19.0	0.8276
AT2G34200			RING/FYVE/PHD zinc finger supe...		Lus10015273 [exp]	20.3	0.7551
AT1G11360			Adenine nucleotide alpha hydro...		Lus10018515 [exp]	20.5	0.7893
AT3G24050	GATA	GATA1	GATA transcription factor 1 (....		Lus10011762 [exp]	25.9	0.8230

Compare expression of checked genes

Lus10034335 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.