Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68290 382 / 3e-134 ENDO2 ,ENDO 2 endonuclease 2 (.1) AT4G21585 311 / 3e-106 ENDO4 endonuclease 4 (.1) AT1G11190 289 / 1e-97 ENDO1, BFN1 ENDONUCLEASE 1, bifunctional nuclease i (.1) AT4G21600 286 / 1e-96 ENDO5 endonuclease 5 (.1) AT4G21590 278 / 2e-93 ENDO3 endonuclease 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041437 [exp] 449 / 2e-161 AT1G68290 327 / 2e-113 endonuclease 2 (.1) Lus10018451 [exp] 297 / 1e-100 AT4G21585 408 / 2e-144 endonuclease 4 (.1) Lus10018452 [exp] 284 / 8e-96 AT1G11190 440 / 3e-157 ENDONUCLEASE 1, bifunctional nuclease i (.1) Lus10011232 [exp] 290 / 3e-94 AT1G11190 441 / 6e-153 ENDONUCLEASE 1, bifunctional nuclease i (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G123500 [exp] 402 / 3e-142 AT1G68290 412 / 1e-146 endonuclease 2 (.1) Potri.011G044400 [exp] 337 / 1e-116 AT4G21585 448 / 3e-160 endonuclease 4 (.1) Potri.011G044500 [exp] 286 / 2e-96 AT1G11190 440 / 5e-157 ENDONUCLEASE 1, bifunctional nuclease i (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0368 [flax] [poplar] PhosC-NucP1 PF02265 [flax] [poplar] S1-P1_nuclease S1/P1 Nuclease
Representative CDS sequence Show only first row Show all	>Lus10034336 pacid=23176008 polypeptide=Lus10034336 locus=Lus10034336.g ID=Lus10034336.BGIv1.0 annot-version=v1.0 ATGATGACAAATGGGTTCATCTTATCACTTTCCCTAATATTGCTGCTCCTATCATCCCCTGCACTGCTAGTTTATGGATGGGGAATCGATGGACACTTCA CCGTCTGCAGAATTGCTCAGCCTCGCCTGAGCGATGCAGCGGCGGCAGCGGTGAAGCAGCTGTTGCCGGCAGATGCAGAGGACTTGGCCAGTCTCTGTTC ATGGGCTGACAAAGTCAAGTTTCGCTATCACTGGTCATCTCCACTTCACTACATTGACACCCCTGATAACCTCTGTACCTACTCCTACAATCGGGACTGC AAGGATGAGACTGGAGAGAAAGGGAGGTGCGTTGACGGGGCAATCCAGAATTACACCACCCAACTCCTTACTTACAACACTCACTCCTTGGACAAGTCTG ACTATAACCTGACAGAAGCTCTGCTCTTCCTATCCCATTTCATTGGTGACATCCATCAGCCTCTTCATGTGGGATTCACATCAGACAAGGGAGGCAACAC CATTGACATCCATTGGTACACAAGGAAGACTGTCCTTCACCATGCATGGGATGACAACATAATCATGACAGCAGAAGACCAGTACTACGACTCCAAAGTT GACGAGTTCATCGATGCCATTCAGAACAACATCACTTCGGGATGGTCAGATCTGGTTCCAAAATGGGAGGCCTGTGGCGGAAGCAACACTGCGTGCCCAA CTGTGTATGCATCTGAAGGTATAAAGACAGCATGCGACTGGGCATACAAAGGGGTTCAAGAAGATTCCACATTGGATGATGATTATTTCGAGTCAAGGTT ACCAGTAGTGAAGTTGAGGCTAGCACAAGCAGGAGTCCGATTGGCCGCTACACTTAACCGCATCTTCCAATGA
AA sequence Show only first row Show all	>Lus10034336 pacid=23176008 polypeptide=Lus10034336 locus=Lus10034336.g ID=Lus10034336.BGIv1.0 annot-version=v1.0 MMTNGFILSLSLILLLLSSPALLVYGWGIDGHFTVCRIAQPRLSDAAAAAVKQLLPADAEDLASLCSWADKVKFRYHWSSPLHYIDTPDNLCTYSYNRDC KDETGEKGRCVDGAIQNYTTQLLTYNTHSLDKSDYNLTEALLFLSHFIGDIHQPLHVGFTSDKGGNTIDIHWYTRKTVLHHAWDDNIIMTAEDQYYDSKV DEFIDAIQNNITSGWSDLVPKWEACGGSNTACPTVYASEGIKTACDWAYKGVQEDSTLDDDYFESRLPVVKLRLAQAGVRLAATLNRIFQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68290		ENDO2 ,ENDO 2	endonuclease 2 (.1)		Lus10034336 [exp]	0	1
AT1G54730			Major facilitator superfamily ...		Lus10029961 [exp]	2.0	0.9456
AT1G22340		ATUGT85A7	UDP-glucosyl transferase 85A7 ...		Lus10035921 [exp]	3.5	0.9086
AT5G42610			Protein of unknown function (D...		Lus10010793 [exp]	5.8	0.9268
AT2G37030			SAUR-like auxin-responsive pro...		Lus10013808 [exp]	6.6	0.9231
AT3G14360			alpha/beta-Hydrolases superfam...		Lus10037465 [exp]	7.0	0.9070
AT1G70670		AtCLO4	Arabidopsis thaliana caleosin ...		Lus10014588 [exp]	7.5	0.9247
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10025409 [exp]	11.7	0.9036
AT4G09890			Protein of unknown function (D...		Lus10020842 [exp]	14.8	0.8993
AT4G09890			Protein of unknown function (D...		Lus10033529 [exp]	18.5	0.8783
AT1G03620			ELMO/CED-12 family protein (.1...		Lus10039805 [exp]	19.6	0.9095

Compare expression of checked genes

Lus10034336 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.