Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25350 1288 / 0 OVA9 ovule abortion 9, glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative (.1.2) AT5G26710 259 / 7e-74 Glutamyl/glutaminyl-tRNA synthetase, class Ic (.1) AT5G19720 223 / 4e-67 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (.1) AT2G47980 134 / 1e-31 SCC3, ATSCC3 sister-chromatid cohesion protein 3 (.1) AT5G64050 52 / 2e-06 ATERS, ERS, OVA3 OVULE ABORTION 3, glutamate tRNA synthetase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041433 [exp] 1569 / 0 AT1G25350 1291 / 0.0 ovule abortion 9, glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative (.1.2) Lus10015341 [exp] 278 / 6e-78 AT2G47980 1347 / 0.0 sister-chromatid cohesion protein 3 (.1) Lus10008306 [exp] 266 / 7e-74 AT2G47980 1261 / 0.0 sister-chromatid cohesion protein 3 (.1) Lus10014335 [exp] 235 / 3e-65 AT5G26710 1071 / 0.0 Glutamyl/glutaminyl-tRNA synthetase, class Ic (.1) Lus10026044 [exp] 234 / 8e-65 AT5G26710 1080 / 0.0 Glutamyl/glutaminyl-tRNA synthetase, class Ic (.1) Lus10041432 [exp] 154 / 6e-44 ND / Lus10012512 [exp] 47 / 7e-05 AT5G64050 887 / 0.0 OVULE ABORTION 3, glutamate tRNA synthetase (.1) Lus10022659 [exp] 47 / 8e-05 AT5G64050 892 / 0.0 OVULE ABORTION 3, glutamate tRNA synthetase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G122200 [exp] 1360 / 0 AT1G25350 1291 / 0.0 ovule abortion 9, glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative (.1.2) Potri.010G122866 [exp] 591 / 0 AT1G25350 558 / 0.0 ovule abortion 9, glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative (.1.2) Potri.010G122932 [exp] 521 / 1e-177 AT1G25350 500 / 1e-173 ovule abortion 9, glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative (.1.2) Potri.005G001200 [exp] 241 / 2e-67 AT5G26710 1116 / 0.0 Glutamyl/glutaminyl-tRNA synthetase, class Ic (.1) Potri.013G000400 [exp] 233 / 1e-64 AT5G26710 1071 / 0.0 Glutamyl/glutaminyl-tRNA synthetase, class Ic (.1) Potri.014G151400 [exp] 187 / 1e-48 AT2G47980 957 / 0.0 sister-chromatid cohesion protein 3 (.1) Potri.002G230800 [exp] 188 / 2e-48 AT2G47980 1292 / 0.0 sister-chromatid cohesion protein 3 (.1) Potri.009G169700 [exp] 53 / 1e-06 AT5G64050 922 / 0.0 OVULE ABORTION 3, glutamate tRNA synthetase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03950 [flax] [poplar] tRNA-synt_1c_C tRNA synthetases class I (E and Q), anti-codon binding domain PF04557 [flax] [poplar] tRNA_synt_1c_R2 Glutaminyl-tRNA synthetase, non-specific RNA binding region part 2 CL0039 [flax] [poplar] HUP PF00749 [flax] [poplar] tRNA-synt_1c tRNA synthetases class I (E and Q), catalytic domain CL0039 [flax] [poplar] PF04558 [flax] [poplar] tRNA_synt_1c_R1 Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1
Representative CDS sequence Show only first row Show all	>Lus10034339 pacid=23176092 polypeptide=Lus10034339 locus=Lus10034339.g ID=Lus10034339.BGIv1.0 annot-version=v1.0 ATGATTGCCCTCAAAGGAGGATTTGGGTCTAAAACGTGGCATCACGACCTTCAACTGTCAGAGATGCGCCAAAAATTTCTTATTGTCGGGTATCAATGCT GGCCGGAAGAGGCATATGGACGGCATATGTTAGAAGTTGACAGAACTGATGATGAATCGGTGACGAGCAAGACGTTTCAAGATTGTAAGAATCTGACTGC CCGAATTTCTGGGTCATTTGTTGCTGCTGGTCGAACCAAGCATCGGTTGGAATTGGATATTCTTAAAATAGTGAAGGGTGGTATTGATTACGCTTTCTTA GATGCTCCGAAACAGCTATTGTTTCTGGAAGACGTGGTGCTTCATTTCGTTCCCAGACTTCCTGTTTCTGACATCTTAGAAATTGTCAAGTATGTGGAAG GAAAAACTGAGAATGTGAACACTGATGAAGATCCAAGTGGTTGGCGCCCCTATAATACTTTTGTAAACAGCTTGCAAGACAAGTATGCAAAGAATGAAGG CTTCCAAGGCCGTCCAATGAAGCGGAGGAACATCAACGGGAAGAAACTGTTTGATGAGCATAGCTCAAGTCAAGAAGATTCCATCAATGCATCGGATGAA GATGAAGCTGTTCCGTTAAGCGCATTCAGAGCTCAAAGAGGTGAAAACAGAAGCGAGACGGCTTCTAGAGCATCAGCTGGATTCGAATTGGCAGGTGTTG CGAGGTACGCTGGGATCCCGACTCACTGTACGTCAATGCTACAGATGGTGCTAGTAGTCGTAGTAGATGAATTTGTAAATTCTTTCCACTTTGATGGCAT CTTGCAGTATGGTTGGATTGGCGCTCTGTCTCACCGTCATTCCAGTTTGCAGCTTAGTCTAGAGGCTCACTGGCTCACTCCCAAGATCGGAGCCATGGGG GTGAAAGAAGATAGCTCAACGGATATTGTGGAGCTGTTTCTGAAGATTGGGCTGGACGAAAGGACTGCTAAGAATACCATCGCCAACAACAAGGTCACCA CCAATCTCACTGCCGTTATTCACGAGGCTGGTGTGACTGGGGGATGTAATCGAACAATTGGAAATCTACTCTACACGGTTGCAACGAAGTACCCTGCCAA TGCCCTTGTACATCGCCCTGCTCTGTTGGAATATGTTGTCTCTTCTAAGATTAAGACCCCAGCCCAGCTTGAAGTTGCCTTCTCATTTCTATCTAACACT GCTTCCGGAACTCTTGAGTTGAAGGATTTCGAAGAAGCATGTGGAGTGGGGGTCGAGGTTTCTGTGGACGATATTCAGAATACTGTTAGTGAGGTGTTTG AGCTGGCTAAGGATTCAATTCTTGCTATGCGTTATCGAACAAATGTGGGTGACCTATTCGCAAATGTTCGCAAGCGGCTTCCATGGGCTGATCCAAAAGT TGTGAAGCAACTCATAGATGCAAAAATGTACGAGTTGCTTGGTGATAGAACAGCAGCCGACAATGAGAAGCCTGCTAAACAGAAAAAAGAAAAGCCTGCT AAAGTTGAGGAAAAGAAGGTCCCTGACGACAATCAAGTGCAGCCCTCTGAAGAAGAACTTAATCCATTCTTAATCTTTCCCAATCCAGAGGAAAATCTTA AGGTGCACACAGAAATATTCTTCAGTGATGGCCCAGTTCTAAGGTGCTCCAACACAAGGGAAAAGCTAGACAAACACCTGAAGTCAACAGGTGGTAAAGT ATATACCCGTTTCCCGCCAGAGCCAAATGGTTATCTGCACATTGGCCATGCTAAGGCAATGTTCGTTAGCTTTGGCCTGGCTAAAGAGAGAGACGGATGC TGTTACCTTAGGTTTGACGACACAAATCCAGAAGCAGAGAAGAAAGAGTACATTGATCACATACAAGAAATTGTCGGCTGGATGGGCTGGAAGCCTTTTA AGATAACATACACAAGTGATTATTTCCAAGAACTCTATGAGTTGGCTGTTGAACTGATAAGAAGGGGTCATGCTTATGTTGATGAACAGACAGCAGAACA GATTAAAGAGTACAGAGAGAAGAAGATGAACAGTCCTTGGAGAGATAGACCTATAGCCGAATCTCTGAGGCTCTTTGATGAAATGAAACAAGGAAAGATT GAAGAAGGAAAAGCAACACTCAGGATGAAGCAAGACATGCAGAGCGACAATTATAATATGTATGACCTAATTGCTTACCGAATAAAGTTCACTCCTCATC CACATGCAGGAGACAAGTGGTGCATCTACCCAAGTTATGATTATGCTCACTGTATCGTGGATTCTCTTGAAAACATCACTCATTCACTTTGTACTTTGGA ATTCGAGACAAGACGTGCATCGTATTACTGGTTGTTGCATTCACTAGACCTTTATCAGCCTCATGTGTGGGAATACTCAAGGCTGAACATTACAAACACA GTAATGTCAAAGCGCAAGTTGAACTTTTTAGTGACAAAGAATCATGTAGATGGCTGGGATGACCCCCGCCTCATGACTTTAGCCGGTTTAAGGCGTAGAG GAGTGACATCATCTGCAATTAATGCATTTGTCCGAGGAATTGGAATCACTAGAAGTGACTGTAGTATGATACGCTTGGATAGGCTTGAATATCACATAAG AGAAGAACTAAATAAGACTGCAGCTCGTACATTGGTTGTGCTAAATCCTCTGAAGGTGGTCATTACCAACCTAGATTCTTCTTCTGCTATGGAGCTTGAT GCTAAGAAATGGCCTGACGCTCAAACACAAGATTCTTCTGCTTTCTATAAGGTTCGTTTTTCTAATGTTGTATATATTGAGCAATCGGATTTCCGGATGA AAGATTCAAAGGATTACTATGGTCTGGCACCTGGAAAATCTGTTCTCCTCAGGTATGCTTTCCCCATTAAGTGTACAGATGTAGTATTAGCAGATGATAA CCAGACTGTTCTTGAGATTCGGGCTGAATACGATCCCTCAAAGAAGACTAAGCCGAAGGGAGTTCTGCACTGGGTTTCTGAACCTTCACCTGGGGTAGAA CCTCTGAAGTTGGAAGTTAGATTGTTTGACAAACTGTTCAACTCTGAGAATCCCGCTGAGCTTGATGATAGGTGGCTTGGTGATCTGAACCCAAATTCCA AGAAAGTTGTGCTTGGTGCATATGCTGTTCCATCGCTTGGAAGTGCTGCCATTGGAGATAGATTCCAGTTTGAAAGACTTGGCTATTTCACACCGGACAA GGACTCTACCCCGGAGCATCTTGTTTTCAATCGGATTGTGACGCTGCGAGATAGCTACGGCAAAGTTGGGAAGTAG
AA sequence Show only first row Show all	>Lus10034339 pacid=23176092 polypeptide=Lus10034339 locus=Lus10034339.g ID=Lus10034339.BGIv1.0 annot-version=v1.0 MIALKGGFGSKTWHHDLQLSEMRQKFLIVGYQCWPEEAYGRHMLEVDRTDDESVTSKTFQDCKNLTARISGSFVAAGRTKHRLELDILKIVKGGIDYAFL DAPKQLLFLEDVVLHFVPRLPVSDILEIVKYVEGKTENVNTDEDPSGWRPYNTFVNSLQDKYAKNEGFQGRPMKRRNINGKKLFDEHSSSQEDSINASDE DEAVPLSAFRAQRGENRSETASRASAGFELAGVARYAGIPTHCTSMLQMVLVVVVDEFVNSFHFDGILQYGWIGALSHRHSSLQLSLEAHWLTPKIGAMG VKEDSSTDIVELFLKIGLDERTAKNTIANNKVTTNLTAVIHEAGVTGGCNRTIGNLLYTVATKYPANALVHRPALLEYVVSSKIKTPAQLEVAFSFLSNT ASGTLELKDFEEACGVGVEVSVDDIQNTVSEVFELAKDSILAMRYRTNVGDLFANVRKRLPWADPKVVKQLIDAKMYELLGDRTAADNEKPAKQKKEKPA KVEEKKVPDDNQVQPSEEELNPFLIFPNPEENLKVHTEIFFSDGPVLRCSNTREKLDKHLKSTGGKVYTRFPPEPNGYLHIGHAKAMFVSFGLAKERDGC CYLRFDDTNPEAEKKEYIDHIQEIVGWMGWKPFKITYTSDYFQELYELAVELIRRGHAYVDEQTAEQIKEYREKKMNSPWRDRPIAESLRLFDEMKQGKI EEGKATLRMKQDMQSDNYNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSLENITHSLCTLEFETRRASYYWLLHSLDLYQPHVWEYSRLNITNT VMSKRKLNFLVTKNHVDGWDDPRLMTLAGLRRRGVTSSAINAFVRGIGITRSDCSMIRLDRLEYHIREELNKTAARTLVVLNPLKVVITNLDSSSAMELD AKKWPDAQTQDSSAFYKVRFSNVVYIEQSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTDVVLADDNQTVLEIRAEYDPSKKTKPKGVLHWVSEPSPGVE PLKLEVRLFDKLFNSENPAELDDRWLGDLNPNSKKVVLGAYAVPSLGSAAIGDRFQFERLGYFTPDKDSTPEHLVFNRIVTLRDSYGKVGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G25350		OVA9	ovule abortion 9, glutamine-tR...		Lus10034339 [exp]	0	1
AT5G15020		SNL2	SIN3-like 2 (.1.2)		Lus10032181 [exp]	7.4	0.8560
AT2G36070		ATTIM44-2	translocase inner membrane sub...		Lus10024888 [exp]	8.1	0.8348
AT3G06290		AtSAC3B	yeast Sac3 homolog B, SAC3/GAN...		Lus10012769 [exp]	11.7	0.8481
AT2G36850		CHOR, ATGSL8, A...	CHORUS, glucan synthase-like 8...		Lus10040891 [exp]	12.1	0.8442
AT5G58100			unknown protein		Lus10027581 [exp]	13.9	0.8339
AT5G14520			pescadillo-related (.1)		Lus10001362 [exp]	19.0	0.8407
AT4G31180			Class II aminoacyl-tRNA and bi...		Lus10028556 [exp]	21.1	0.7452
AT5G49880			mitotic checkpoint family prot...		Lus10007439 [exp]	24.6	0.8207
AT2G47980		SCC3, ATSCC3	sister-chromatid cohesion prot...		Lus10008306 [exp]	27.9	0.8321
AT4G00060		MEE44	maternal effect embryo arrest ...		Lus10015887 [exp]	29.7	0.8171

Compare expression of checked genes

Lus10034339 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.