Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68350 39 / 0.0008 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013533 [exp] 289 / 3e-101 AT1G68350 50 / 5e-08 unknown protein Lus10041431 [exp] 289 / 3e-101 AT1G68350 50 / 5e-08 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G122700 [exp] 57 / 2e-10 AT1G68350 87 / 4e-22 unknown protein Potri.010G122600 [exp] 49 / 2e-07 AT1G68350 82 / 4e-20 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034340 pacid=23175866 polypeptide=Lus10034340 locus=Lus10034340.g ID=Lus10034340.BGIv1.0 annot-version=v1.0 ATGCCGAACAAATTGATGGCCAGAGAAAGGCTACTCATCGTCTTCCACAAACTATCGGATCGCCTCCGAGCTTCCATCCGAAACAGGAAACTAAGTCTAG CTTTCCTCTCCAGAAGATTTCTCAAGCACAAATATAATTTGGACGCTGATCATTATTACCTCGATTGCCGGCGGCACGGTCAGGAGTTCTCTGCTTCCAG TACTCCTCTTATTTATCCCCGCCGCTACCGGGGTAACAACTATCTCGACTCTCTGTTATTGCTCTTCCGCGCTGCCGCTTGTTTCGGAGGTGGAGATCGT GCGAGTGTCAGACTGTCGATCGGGACTAGTTTTCGGAACCACGATGACGTCATCGACGTCGTCTGCTGGCCGGAAGAGCAACAACCGTACGATTACGGAG GAGGAGGAGCGTTGGTGGAATGGAAGGGAGGTGAGGAGTCGTCGGAGGCTGAGGAGGAATCGGTGGATTTGAAGGCTGAGAGATTTATTGAGCGGTTTTA TATGGAGATGAGAATGCAGCAGAGACGCCGATCTCTATAG
AA sequence Show only first row Show all	>Lus10034340 pacid=23175866 polypeptide=Lus10034340 locus=Lus10034340.g ID=Lus10034340.BGIv1.0 annot-version=v1.0 MPNKLMARERLLIVFHKLSDRLRASIRNRKLSLAFLSRRFLKHKYNLDADHYYLDCRRHGQEFSASSTPLIYPRRYRGNNYLDSLLLLFRAAACFGGGDR ASVRLSIGTSFRNHDDVIDVVCWPEEQQPYDYGGGGALVEWKGGEESSEAEEESVDLKAERFIERFYMEMRMQQRRRSL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68350			unknown protein		Lus10034340 [exp]	0	1
AT5G62550			unknown protein		Lus10024245 [exp]	3.3	0.8403
AT1G68350			unknown protein		Lus10013533 [exp]	5.1	0.7757
AT1G68350			unknown protein		Lus10041431 [exp]	5.3	0.7750
AT1G70370		PG2	polygalacturonase 2 (.1.2)		Lus10013009 [exp]	6.3	0.7920
AT3G11680			Aluminium activated malate tra...		Lus10021272 [exp]	7.9	0.8217
AT1G60060			Serine/threonine-protein kinas...		Lus10012986 [exp]	8.8	0.8351
AT5G07170			Cell cycle regulated microtubu...		Lus10031109 [exp]	12.4	0.7449
					Lus10015658 [exp]	13.3	0.8063
AT2G38890			unknown protein		Lus10023488 [exp]	14.1	0.7539
					Lus10020368 [exp]	14.3	0.8041

Compare expression of checked genes

Lus10034340 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.