Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68330 74 / 5e-15 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041430 [exp] 350 / 9e-122 AT1G68330 111 / 4e-29 unknown protein Lus10009160 [exp] 47 / 9e-06 AT1G67050 152 / 1e-44 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G122300 [exp] 163 / 7e-49 AT1G68330 134 / 6e-38 unknown protein Potri.010G122800 [exp] 143 / 4e-41 AT1G68330 136 / 7e-39 unknown protein Potri.017G115700 [exp] 62 / 3e-11 AT1G67050 112 / 6e-30 unknown protein Potri.004G098700 [exp] 62 / 6e-11 AT1G67050 117 / 6e-32 unknown protein Potri.015G045700 [exp] 61 / 1e-10 AT1G48780 107 / 8e-28 unknown protein Potri.012G055300 [exp] 45 / 2e-05 AT1G48780 105 / 2e-27 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07816 [flax] [poplar] DUF1645 Protein of unknown function (DUF1645)
Representative CDS sequence Show only first row Show all	>Lus10034341 pacid=23176095 polypeptide=Lus10034341 locus=Lus10034341.g ID=Lus10034341.BGIv1.0 annot-version=v1.0 ATGGCGGTGGATGTCTGTTCAGAGATTCCAAGTCCAGGTATTATTAGCCCTCGGATTTCCTTCTCCCATGACCTTAATACCAACAACAACAACCAAACAC CGGAAATTTCGGAGGACTGCCCCAGATTAGATTCCTGTCTTTTGGACTCAGATTTCGATTTCTTCATCGGCGCCGGCGGAACCAATTTCCAGCAAGAGCT TTCATCCGCCGACGAGCTCTTCTCGAACGGCACCATCTTACCTGTCCAATTTCAGAAACAAAAAGAGTCACATTATCATCCCCCCACCGGAAAGAAAGCA ATTCCCCTGCCTCCTCCTCCTCCTCCTCCGCCGCAGCCGGCGCGTGAAGACTCCGACAAGAAGGATGTTCCGAAGCTGCTGAAAGAGTTCCTGTCAATGA GTCTTGACGGAGATGAAGACGACCAAAGTCAAACACCTGCGCCGACGGTATCGAAATCAGTATGGCCGCAGTTCAAGAGAAGCAACAGTCTCAACAGCAT CCGAAGCAGAGGAGGGGACCTAATCCGATCTCTCCATTTTCTCTCTAGAAGCCATTCAACCGGATCAGCTCCAATTCCTTCGAGTAACAAATCAGTGCCG CCGCCGTCGTCGAAGGAAAAACCGCATCTACGGAAGCAGAGGTCGGTTCCCTGCAGCAGGAAATCGCCGTTTTATCCCTACAATCTCACCAATAATAATG CAGCTGGACAGCAAAAGTCGACTCGGCCACATCTGAGGAAATGCGGGTCGTACGGGAACAACAATAACTGTGGCGTTAGAATTAGCCCGGTGTTAAACAT CCCTTCACCGACATTCATCTCCAGGGGAACGGTCAATATTTTTGGTTCACTGTTCTGTAACGGGAAGGTTAAAAAGAAGAAGAAGAAGAGATGA
AA sequence Show only first row Show all	>Lus10034341 pacid=23176095 polypeptide=Lus10034341 locus=Lus10034341.g ID=Lus10034341.BGIv1.0 annot-version=v1.0 MAVDVCSEIPSPGIISPRISFSHDLNTNNNNQTPEISEDCPRLDSCLLDSDFDFFIGAGGTNFQQELSSADELFSNGTILPVQFQKQKESHYHPPTGKKA IPLPPPPPPPPQPAREDSDKKDVPKLLKEFLSMSLDGDEDDQSQTPAPTVSKSVWPQFKRSNSLNSIRSRGGDLIRSLHFLSRSHSTGSAPIPSSNKSVP PPSSKEKPHLRKQRSVPCSRKSPFYPYNLTNNNAAGQQKSTRPHLRKCGSYGNNNNCGVRISPVLNIPSPTFISRGTVNIFGSLFCNGKVKKKKKKR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68330			unknown protein		Lus10034341 [exp]	0	1
AT2G42320			nucleolar protein gar2-related...		Lus10040502 [exp]	3.5	0.8438
AT5G62690		TUB2	tubulin beta chain 2 (.1)		Lus10002000 [exp]	3.5	0.8650
AT5G40150			Peroxidase superfamily protein...		Lus10039471 [exp]	6.7	0.8386
AT4G33640			unknown protein		Lus10020463 [exp]	7.9	0.8250
					Lus10042355 [exp]	11.2	0.8325
AT2G39770		VTC1, SOZ1, GMP...	VITAMIN C DEFECTIVE 1, SENSITI...		Lus10040265 [exp]	11.5	0.8336
AT5G24580			Heavy metal transport/detoxifi...		Lus10032923 [exp]	17.0	0.8060
AT1G01540			Protein kinase superfamily pro...		Lus10007919 [exp]	18.3	0.8003
AT1G05850		CTL1, HOT2, ERH...	POM-POM1, SENSITIVE TO HOT TEM...		Lus10037430 [exp]	18.5	0.8226
AT5G52060		ATBAG1	BCL-2-associated athanogene 1 ...		Lus10027420 [exp]	18.5	0.8074

Compare expression of checked genes

Lus10034341 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.