Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39980 970 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62930 213 / 2e-60 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62910 207 / 4e-58 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63080 199 / 3e-55 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 198 / 5e-55 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62670 196 / 5e-54 RPF2 rna processing factor 2 (.1) AT1G63150 189 / 2e-51 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G22470 184 / 4e-50 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74850 185 / 3e-49 PDE343, PTAC2 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) AT1G63400 179 / 2e-48 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041429 [exp] 1255 / 0 AT5G39980 976 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002107 [exp] 194 / 9e-53 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014244 [exp] 185 / 2e-50 AT1G12700 397 / 7e-130 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10014245 [exp] 179 / 3e-48 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10013894 [exp] 179 / 3e-47 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10043417 [exp] 171 / 1e-44 AT3G06920 1358 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003657 [exp] 170 / 2e-44 AT2G31400 902 / 0.0 genomes uncoupled 1 (.1) Lus10027916 [exp] 170 / 3e-44 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017684 [exp] 168 / 9e-44 AT4G28010 596 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G075700 [exp] 1023 / 0 AT5G39980 1045 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G271200 [exp] 190 / 2e-52 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G166200 [exp] 188 / 3e-50 AT2G18940 1082 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G264800 [exp] 184 / 9e-49 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1) Potri.016G025600 [exp] 181 / 1e-48 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G297300 [exp] 182 / 3e-48 AT5G02860 1129 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G092100 [exp] 181 / 6e-48 AT5G02860 1146 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G069100 [exp] 180 / 2e-47 AT1G74850 1268 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Potri.006G271400 [exp] 176 / 2e-47 AT1G12700 486 / 3e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.019G021200 [exp] 174 / 1e-46 AT1G12700 491 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10034342 pacid=23176071 polypeptide=Lus10034342 locus=Lus10034342.g ID=Lus10034342.BGIv1.0 annot-version=v1.0 ATGTCCTCCATTTCTTTCTCTGCTCTGCAATTGCTACCCACTGATTCTTTTTCTTCCCCTACCATCTTCTCCCATGTCCGTGTTCCCTTTCCACAGTCCT GCTTTTACTCCGACACTCTCGCCGCCGCCGGAACCCATCTCCTCCGCGCTGCGGCAATCAGGAAAGATGTCTGGACCAGAAGACAAACCCAGGAGCCCGT CTATGTGGATCACACCATTGACATGGATGAACTCCTCTCTTCCATCAGACAGACCCACGACGAGCGTGAACTCTACTCCTTGTTGTCTCCGTACAACGAA AGGCAGCTTTCGATTCGTTTCATGGTCTCCCTCCTCTCTCGCGAACCGGATTGGCAGAGGTCTCTCGCCCTTCTCGATTGGATCAACGAAGTGGCCCGGT ATCCCCCTTCCGTTTTCGCCTACAACGTGGTGCTGAGGAATGTGCTCAGGGCCAAAAGATGGGAGCTTGCACACGGCCTGATCGATGAAATGCGCCAGAG AGGTTTGGCTGCCGATAAATACACTTACTCTACGCTGATTACCGAATTCGGCAAATCAGGCAAGTTGGATTCTTCCCTGTTCTGGCTTCAGCAGATGGAG CAAGATGGAGGAGTCTCTGGTGACCTTGTCTTGTACAGTAACTTGATTGAGCTTGCGAGGAAGTTGTGTGATTACTCCAAGGCTATATCAGTCTTTGTGA GGTTGAAGAGGAAAGGGATTACGCCTGATTTAGTTGTGTATAACTCGACGATCAATGTGTTCGGGAAAGCAAAGCTTTTCAGGGAAGCCAGGATGTTGTT GGAGGAAATGAGATATGTGGAGGTCCCTCCTGATACTGTTAGCTACTCCACTTTGTTGACTGTTTACGTAGAGAATGGTAAGTTCGTTGAGGCCCTATCT GTATTTGCCGAGATGAATGAGGCTCAGTGCCCACTTAATCTCACGACGTGCAATATAATGATGGATGTTTATGGACAGCTTGATATGGCTAAAGAAGCAG ATACTTCGTTTTGGAGCATGAGGAAGATGGGGATTGAACCGACTGTGGTAAGTTACAACACCCTTCTGAGGGTTTACGGAGAAGCTGAACTTTTCGGAGA GGCAATCCATCTGTTTAGGTTGATGCAGAGGAAAGAGATTGAACAGAATGTGGTTACGTTTAACACAATGGTTATGATCTACGGGAAAACACTTGAGCAT GACAAGGCTACGAACCTAATCCAGGAAATGCAGAAGAGGGGCATTGAGCCCAACGCAATAACCTACTCTACAATCATTTCCATCTGGGAAAAAGCAGGTA AACTGGATAAGGCAGCAATGTTGTTCGAAAAGCTGAGGAGTTCAGGTGCAGAGATTGACGATGTACTCTACCAAACAATGATGGTGGCTTATGAGAGGGC AGGTTTAGTGGCTCAGTCGAAGCGTCTTTTGCATGAACTGAAGAGACCTGATAACATCCCTAGGGATACTGCTATCAAAATTCTTGCTAAAGCTGGTAGG ATAGAAGAGGCAACCTGGGTATTTCGCCAGGCTGTTGAAGCTGGAGAGGTGAAGGATATTTCTGTGTTCGGATGCTTGATAAGCCAATTGTCAAGGAACA AGAAGCATGAGAATGTGGTGGAAGTGTTTGAGAACATGAGAGACTGTGGGTATTTCCCTGATTCCGATGTTATTGCTCTTGTGCTTAATGCGTATGGGAA GCTGCGGGAATTCGAGAAAGCAGATGGTGTTTATAGGGAAATGCAGAGGGAAGGGTGTGTTTTCCCAGATGAAGTTCACTTCCAGATGCTCAGTCTGTAT GGTGCAAGGAGGGATTTTGTGGCAGTAGAAACGCTATTTGAGAGGCTGGACTCCGATCCAAACATCAACAAGAAGGAATTGCATCTTGTTGTTGCCGGAA TATTTGAAAGGGCGAATAGATTAACTGATGCTTCCCGAGTCATGAACAGAATGAAGACAGTGGGAATGTCCAACTTATTATTATGA
AA sequence Show only first row Show all	>Lus10034342 pacid=23176071 polypeptide=Lus10034342 locus=Lus10034342.g ID=Lus10034342.BGIv1.0 annot-version=v1.0 MSSISFSALQLLPTDSFSSPTIFSHVRVPFPQSCFYSDTLAAAGTHLLRAAAIRKDVWTRRQTQEPVYVDHTIDMDELLSSIRQTHDERELYSLLSPYNE RQLSIRFMVSLLSREPDWQRSLALLDWINEVARYPPSVFAYNVVLRNVLRAKRWELAHGLIDEMRQRGLAADKYTYSTLITEFGKSGKLDSSLFWLQQME QDGGVSGDLVLYSNLIELARKLCDYSKAISVFVRLKRKGITPDLVVYNSTINVFGKAKLFREARMLLEEMRYVEVPPDTVSYSTLLTVYVENGKFVEALS VFAEMNEAQCPLNLTTCNIMMDVYGQLDMAKEADTSFWSMRKMGIEPTVVSYNTLLRVYGEAELFGEAIHLFRLMQRKEIEQNVVTFNTMVMIYGKTLEH DKATNLIQEMQKRGIEPNAITYSTIISIWEKAGKLDKAAMLFEKLRSSGAEIDDVLYQTMMVAYERAGLVAQSKRLLHELKRPDNIPRDTAIKILAKAGR IEEATWVFRQAVEAGEVKDISVFGCLISQLSRNKKHENVVEVFENMRDCGYFPDSDVIALVLNAYGKLREFEKADGVYREMQREGCVFPDEVHFQMLSLY GARRDFVAVETLFERLDSDPNINKKELHLVVAGIFERANRLTDASRVMNRMKTVGMSNLLL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39980			Tetratricopeptide repeat (TPR)...		Lus10034342 [exp]	0	1
AT2G40860			protein kinase family protein ...		Lus10002993 [exp]	1.0	0.8707
					Lus10019876 [exp]	6.7	0.8551
AT1G03750		SWI2, SNF2, CHR...	CHROMATIN REMODELING 9, switch...		Lus10017712 [exp]	6.9	0.8338
AT5G37980			Zinc-binding dehydrogenase fam...		Lus10004380 [exp]	10.1	0.8560
AT5G45850			Protein of unknown function (D...		Lus10015280 [exp]	11.8	0.8456
AT1G30910			Molybdenum cofactor sulfurase ...		Lus10007754 [exp]	14.5	0.8220
AT3G51370			Protein phosphatase 2C family ...		Lus10028408 [exp]	15.0	0.8058
AT5G06470			Glutaredoxin family protein (....		Lus10013597 [exp]	15.9	0.8119
AT2G30160			Mitochondrial substrate carrie...		Lus10042258 [exp]	16.4	0.8290
AT4G00110		GAE3	UDP-D-glucuronate 4-epimerase ...		Lus10015876 [exp]	17.5	0.8260

Compare expression of checked genes

Lus10034342 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.