Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38830 673 / 0 Cysteinyl-tRNA synthetase, class Ia family protein (.1) AT2G31170 619 / 0 FIONA, SYCOARATH ,SYCO ARATH cysteinyl t-RNA synthetase, FIONA, Cysteinyl-tRNA synthetase, class Ia family protein (.1.2) AT3G56300 545 / 0 Cysteinyl-tRNA synthetase, class Ia family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041428 [exp] 1058 / 0 AT5G38830 687 / 0.0 Cysteinyl-tRNA synthetase, class Ia family protein (.1) Lus10010336 [exp] 1022 / 0 AT5G38830 684 / 0.0 Cysteinyl-tRNA synthetase, class Ia family protein (.1) Lus10021862 [exp] 1014 / 0 AT5G38830 686 / 0.0 Cysteinyl-tRNA synthetase, class Ia family protein (.1) Lus10001921 [exp] 576 / 0 AT2G31170 831 / 0.0 cysteinyl t-RNA synthetase, FIONA, Cysteinyl-tRNA synthetase, class Ia family protein (.1.2) Lus10001953 [exp] 238 / 5e-74 AT2G31170 305 / 5e-102 cysteinyl t-RNA synthetase, FIONA, Cysteinyl-tRNA synthetase, class Ia family protein (.1.2) Lus10001954 [exp] 197 / 3e-56 AT4G32120 489 / 8e-172 Galactosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G122500 [exp] 761 / 0 AT5G38830 682 / 0.0 Cysteinyl-tRNA synthetase, class Ia family protein (.1) Potri.018G024300 [exp] 607 / 0 AT2G31170 856 / 0.0 cysteinyl t-RNA synthetase, FIONA, Cysteinyl-tRNA synthetase, class Ia family protein (.1.2) Potri.004G226700 [exp] 43 / 0.0008 AT1G09620 1647 / 0.0 ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Potri.008G122901 [exp] 0 / 1 AT5G38830 0 / 1 Cysteinyl-tRNA synthetase, class Ia family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF01406 [flax] [poplar] tRNA-synt_1e tRNA synthetases class I (C) catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10034343 pacid=23176061 polypeptide=Lus10034343 locus=Lus10034343.g ID=Lus10034343.BGIv1.0 annot-version=v1.0 ATGGCGGATAGAGCAGAGATAGAGAAGAAGGAGTTCAGGTTATACAATACAATGAGTAAAACCGTGGAGATTTTCAAGCCCATTGTTCCTGGCAAAGTTG GCATGTACGTGTGTGGTGTAACTGCCTACGACTTAAGCCACATTGGACATGCTCGTGCTGCGGTAGTATTTGATGTTCTCTTCAGGTACCTGCAGCACTT GGGTTATGAAGTTACATATGTGAGGAATTTTACGGATATCGATGACAAGATAATTAAGCGTGCAAATGAACTTAATGAAGATCCATTGTCCTTAAGTAAC CGCTTCTGTGAAGAGTATCTTCTTGACATGGGAAAGCTACAGTGCCTGCCTCCAACTCATCAGCCACGGGTAACTGAACACATGGACAATATCAAGAACA TGATCACGCAGATTATGCAAAATGGCTGTGCATATGCCGTTGAAGGCGATGTGTTCTTCGCAGTTGAGAAGTCCCCAAACTACGGACAGTTATCTGGGAG GAAGTTGGAGGACAACAGAGCTGGTGAACGTGTTGCTGTTGACTTAAGAAAGCGTAATCCTGCAGATTTCGCTCTATGGAAGGCTGCAAAGGAGCATGAA CCAAGATGGGAAAGCTCATGGGGGCCGGGGAGACCAGGATGGCATATTGAATGCAGTGCAATGAGTGCACAATATCTTTCTTTCAAATTTGATATTCACG GTGGGGGAAGCGATTTGATCTTCCCACATCACGAAAATGAAGTAGCTCAAAGTGGTGCTGCTTGCAGCGAAAGCAAAATAAATTTTTGGGTGCACAATGG ACATGTCACCAATAATCATTTGAAGATGTCAAAATCATTGGGCAATTTTTTCACCATACGTCAGATTATGGAAAAGTACCAACCACTGGCTTTGCGGATG TTCTTGATGAGTGCTCACTACCGTTCCCCGCTCAATTACTCCATTGGTCAGATAGAAAAGGCGTCAGACACAGTTTCTTACATTTATCAGACGTTGCACG ACTGTGAGGTTGCTTTATTACCATTTCAAGAAAGCTTAAAGGAAGAAAGCACCACAAAGAATGAAAAGAAAGACAAGACCATTCAGAAGGCCCAAGAATG CATCACTAGCTTGCAAGATGATTTTGAAGCTAAAATGTCCGAGGATCTAAACACGTCACATGTGTTAACTGGTGCATTCCATGAAGCTTTGAAGTTCCTA AATGCTAATTTAAGCCCTCCAAAGAAGAAGCAGCAGAAGCAACAGCTAACGTCATTACCCAAGTACCTTGCTGAATTAGCAAGAGAAATTGAGAGGGTAC TTAGGATTCTGGGCTTGCTGCCAACTTGCAGCTATAGCGAGGTGTTGCAGCAGTTCAAAGAGAAGGCATTGATTAGGGCAGAACTGAAGGAAGAGGATGT TGGTCGGCTGATTGAAGATAGAAAAGCTGCAAGGAAAAATAAGGAGTTTGCAAGAAGTGATGGCATCAGAGCTGATTTAGCTAAGAAGGGAATTGCACTG ATGGATGTTGGGACTGAAACCGTTTGGAGACCGTGTGTTCCTGTAGTGCAGGAAGAAGAGGCAGCAGCTGTAGCAGCAGCAGTAGAGGCAGTAGGGTTAG GGGAACAGAGTTCATCAACATCAGCGCCAAGTTAA
AA sequence Show only first row Show all	>Lus10034343 pacid=23176061 polypeptide=Lus10034343 locus=Lus10034343.g ID=Lus10034343.BGIv1.0 annot-version=v1.0 MADRAEIEKKEFRLYNTMSKTVEIFKPIVPGKVGMYVCGVTAYDLSHIGHARAAVVFDVLFRYLQHLGYEVTYVRNFTDIDDKIIKRANELNEDPLSLSN RFCEEYLLDMGKLQCLPPTHQPRVTEHMDNIKNMITQIMQNGCAYAVEGDVFFAVEKSPNYGQLSGRKLEDNRAGERVAVDLRKRNPADFALWKAAKEHE PRWESSWGPGRPGWHIECSAMSAQYLSFKFDIHGGGSDLIFPHHENEVAQSGAACSESKINFWVHNGHVTNNHLKMSKSLGNFFTIRQIMEKYQPLALRM FLMSAHYRSPLNYSIGQIEKASDTVSYIYQTLHDCEVALLPFQESLKEESTTKNEKKDKTIQKAQECITSLQDDFEAKMSEDLNTSHVLTGAFHEALKFL NANLSPPKKKQQKQQLTSLPKYLAELAREIERVLRILGLLPTCSYSEVLQQFKEKALIRAELKEEDVGRLIEDRKAARKNKEFARSDGIRADLAKKGIAL MDVGTETVWRPCVPVVQEEEAAAVAAAVEAVGLGEQSSSTSAPS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38830			Cysteinyl-tRNA synthetase, cla...		Lus10034343 [exp]	0	1
AT1G50430		ST7R, PA, LE, 7...	PARVA, LEPIDA, DWARF 5, DELTA5...		Lus10035723 [exp]	2.8	0.9525
AT3G56130			biotin/lipoyl attachment domai...		Lus10040959 [exp]	3.0	0.9618
AT5G67500		VDAC2, ATVDAC2	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10007739 [exp]	3.9	0.9556
AT2G04400			Aldolase-type TIM barrel famil...		Lus10006354 [exp]	4.9	0.9613
AT1G47490		ATRBP47C	RNA-binding protein 47C (.1.2)		Lus10021754 [exp]	5.5	0.9469
AT1G51980			Insulinase (Peptidase family M...		Lus10038262 [exp]	7.9	0.9490
AT2G16595			Translocon-associated protein ...		Lus10007577 [exp]	9.2	0.9454
AT5G60640		ATPDI2, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10037403 [exp]	10.5	0.9515
AT1G31690			Copper amine oxidase family pr...		Lus10026757 [exp]	11.2	0.9475
AT3G22830	HSF	AT-HSFA6B	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10039376 [exp]	12.0	0.9453

Compare expression of checked genes

Lus10034343 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.