Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68370 594 / 0 ARG1 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) AT1G24120 437 / 6e-152 ARL1 ARG1-like 1 (.1) AT1G59980 366 / 3e-124 GPS4, ARL2 ,ATDJC39 gravity persistence signal 4, ARG1-like 2 (.1) AT1G21080 51 / 7e-07 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) AT5G48030 51 / 9e-07 GFA2 gametophytic factor 2 (.1) AT2G20560 50 / 1e-06 DNAJ heat shock family protein (.1) AT4G28480 50 / 1e-06 DNAJ heat shock family protein (.1.2) AT3G08910 50 / 1e-06 DNAJ heat shock family protein (.1) AT4G39150 50 / 2e-06 DNAJ heat shock N-terminal domain-containing protein (.1.2) AT3G62600 50 / 2e-06 ATERDJ3B DNAJ heat shock family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005113 [exp] 692 / 0 AT1G68370 688 / 0.0 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) Lus10029202 [exp] 417 / 3e-144 AT1G24120 616 / 0.0 ARG1-like 1 (.1) Lus10010717 [exp] 416 / 3e-143 AT1G24120 590 / 0.0 ARG1-like 1 (.1) Lus10030660 [exp] 389 / 1e-132 AT1G24120 588 / 0.0 ARG1-like 1 (.1) Lus10030827 [exp] 375 / 6e-128 AT1G24120 545 / 0.0 ARG1-like 1 (.1) Lus10011934 [exp] 57 / 2e-08 AT5G48030 499 / 8e-176 gametophytic factor 2 (.1) Lus10014584 [exp] 55 / 6e-08 AT3G62600 521 / 0.0 DNAJ heat shock family protein (.1) Lus10022297 [exp] 55 / 6e-08 AT3G62600 522 / 0.0 DNAJ heat shock family protein (.1) Lus10032100 [exp] 55 / 6e-08 AT3G62600 526 / 0.0 DNAJ heat shock family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G122300 [exp] 620 / 0 AT1G68370 671 / 0.0 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) Potri.008G123200 [exp] 609 / 0 AT1G68370 670 / 0.0 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) Potri.010G036200 [exp] 416 / 4e-144 AT1G24120 566 / 0.0 ARG1-like 1 (.1) Potri.008G193500 [exp] 411 / 5e-142 AT1G24120 568 / 0.0 ARG1-like 1 (.1) Potri.004G158300 [exp] 59 / 2e-09 AT4G39150 469 / 2e-167 DNAJ heat shock N-terminal domain-containing protein (.1.2) Potri.009G065500 [exp] 54 / 1e-07 AT5G48030 504 / 1e-177 gametophytic factor 2 (.1) Potri.002G198000 [exp] 52 / 3e-07 AT3G62600 551 / 0.0 DNAJ heat shock family protein (.1) Potri.001G271300 [exp] 52 / 7e-07 AT5G48030 530 / 0.0 gametophytic factor 2 (.1) Potri.005G073900 [exp] 51 / 7e-07 AT2G22360 659 / 0.0 DNAJ heat shock family protein (.1) Potri.007G136700 [exp] 51 / 8e-07 AT2G20560 416 / 5e-146 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10034344 pacid=23175954 polypeptide=Lus10034344 locus=Lus10034344.g ID=Lus10034344.BGIv1.0 annot-version=v1.0 ATGGTTGCTTGTCTGAAAGAAGAAGAAGAAGAAGAAGAGAGAAAGAAGTTTAGGAGAGAGAGTTGGTCGGCAACGGAGCGGACGGTTCTAGAGTTCCAAC CAGGCTCTGATACCATGCCAAAATATGAGGACAAGTATCATCCGGACAAGAATGCCAATAATCCGGAAGCTTCAGAACTGTTCAAAGAGGTTGCATATTC CTATAGTATTTTATCTGACCCAGAGAAGAGGAGACAGTATGACAGTGCAGGATTTGAGGCTCTGGATGCTGAAAGTATGGATATGGAAATTGATTTGTCA AACCTTGGAACAGTAAATACAGTGTTTGCTGCATTATTCAGCAAGCTCGGCGTTCCTATTAAGACGACGATATCTGCTAATGTACTTGAAGAAGCTTTGA ATGGAACTGTTACAATCAGACCCCTTCCAATGGGGACATCAGTCAGTGGAAAGGTGGACAAGCAATCTGCACACTTCTTTGGTGTGACAATAAACGAGCA ACAAGCGGAGGCTGGGATTGTTGTGAGGGTTACCTCTACCGCACAGAGCAAATTCAAGTTGCTTTATTTTGAACAAGACGTGAATGGTGGATACGGTCTG GCGGGACAGGAAGATAGTGAGAAAGCAGGGAAGGTGACATCTGCTGGAATGTATTTCTTGCATTTTCAAGTTTACAGAATGGATTCAACTCTCAACGCTT TAGCTATCGCTAAGGATCCTGATGCTGCTTTTTTCAAGAGATTGGAAGGTCTTCAACCTTGTGATGTCTCGGAACTCAAAGCGGGCACTCACATATTTGC TGTTTATGGTGATAATTTTTTCAAGACAGCTACATATACGATTGAAGCACTGTGTGCAAAGTCATACGAGGAAACAACAGAAAGGCTAAAGGATATAGAG GCCCAAATTTTAAGAAAAAGAAATGACCTACGTCAGTTTGAGACTGAATATAGGAAGGCTTTGGCACGCTTTCAGGAAGTAACCAACAAATACACCCAAG AAAAGCAAGCTGTTGATGAGCTGCTGAAACAGCGGGATAGTATTCACTCGTCATTTACAGTAAACAGGAGTGTTAGTAACATAAGTAATGGAAGTTCAAG CAAAGGTGTTGGGGATGAATCAAGATGTGGTGGAAGTTCAAGCAAAGTTGTTGGGGATGAATCAAGATGTGGAAGTCCAGGAATGGAAGAAGTTGGGTCT GACGGGAAAGATAAAGCATCTAAAAAGAAATGGTTCAACTTGAATCTCAAAAGTGACAAGAAGCCATGA
AA sequence Show only first row Show all	>Lus10034344 pacid=23175954 polypeptide=Lus10034344 locus=Lus10034344.g ID=Lus10034344.BGIv1.0 annot-version=v1.0 MVACLKEEEEEEERKKFRRESWSATERTVLEFQPGSDTMPKYEDKYHPDKNANNPEASELFKEVAYSYSILSDPEKRRQYDSAGFEALDAESMDMEIDLS NLGTVNTVFAALFSKLGVPIKTTISANVLEEALNGTVTIRPLPMGTSVSGKVDKQSAHFFGVTINEQQAEAGIVVRVTSTAQSKFKLLYFEQDVNGGYGL AGQEDSEKAGKVTSAGMYFLHFQVYRMDSTLNALAIAKDPDAAFFKRLEGLQPCDVSELKAGTHIFAVYGDNFFKTATYTIEALCAKSYEETTERLKDIE AQILRKRNDLRQFETEYRKALARFQEVTNKYTQEKQAVDELLKQRDSIHSSFTVNRSVSNISNGSSSKGVGDESRCGGSSSKVVGDESRCGSPGMEEVGS DGKDKASKKKWFNLNLKSDKKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68370		ARG1	ALTERED RESPONSE TO GRAVITY 1,...		Lus10034344 [exp]	0	1
AT5G01010			unknown protein		Lus10029706 [exp]	2.0	0.8962
AT5G61530			small G protein family protein...		Lus10032491 [exp]	2.8	0.8797
AT2G21270		UFD1	ubiquitin fusion degradation 1...		Lus10018057 [exp]	3.2	0.8895
AT3G59350			Protein kinase superfamily pro...		Lus10026706 [exp]	3.5	0.8988
AT5G53530		VPS26A	vacuolar protein sorting 26A (...		Lus10008868 [exp]	3.6	0.9081
AT2G32260		ATCCT1	phosphorylcholine cytidylyltra...		Lus10003808 [exp]	6.2	0.8991
AT1G71790			Subunits of heterodimeric acti...		Lus10003086 [exp]	6.9	0.8751
AT3G14770		SWEET2, AtSWEET...	Nodulin MtN3 family protein (....		Lus10011990 [exp]	7.7	0.8664
AT2G38610			RNA-binding KH domain-containi...		Lus10034443 [exp]	7.9	0.8802
AT4G08520			SNARE-like superfamily protein...		Lus10006883 [exp]	9.4	0.8597

Compare expression of checked genes

Lus10034344 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.