Plant FIBer expression Database

Lus10034345 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G73885 113 / 1e-31 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005112
[exp]
265 / 2e-91 AT1G73885 115 / 2e-32 unknown protein
Lus10036498
[exp]
0 / 1 ND /
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G053800
[exp]
145 / 4e-44 AT1G73885 137 / 9e-41 unknown protein
Potri.015G054100
[exp]
141 / 5e-43 AT1G73885 135 / 6e-41 unknown protein
PFAM info
Representative CDS sequence
>Lus10034345 pacid=23175884 polypeptide=Lus10034345 locus=Lus10034345.g ID=Lus10034345.BGIv1.0 annot-version=v1.0
ATGGCGCTCTTCGTCGCCAACGGCAACGGCGGCACCGGAGCTACAACTCTCTCCGCCGCTACTAACTCAGCTGCTTCCATACACTGCCATCAGTACGCCT
CCTCCTTCCCCCGTCTACCTCTGCCGCTCTCTCCCAAAAGAGCTCACCTACAGATAGTCTCCGCAAGGAACAACAGGCGGAGCTCAACCAAAACGACTGA
GAAACGGGACAAGATTGATGAGGCTGAGCTTGAAAATAGTATGGGGAGCAGCGCCGGTTTGAATGGTAGTAGCAGCGTTGGTGTCGTTGATGATGGATTT
GTAATGCCGAAGCTTCCAGGACAGGAGAAAGATTTCTGGGAAGGTCCGCAGTGGAATACTCTGGGCTTCGTTGTCGAGTATCTCTGGGGTTTCGGTATTA
TTTTCGCGTTGGTAGCCTGTGGAGTTGCAGTGTCGTCATACAATGAAGGGGCAACAGATTTCAAGGACACTGAGGCATACAAGGAGTCTACTCAGGCAGG
AGGGCAGGTTTTAGAAGAAGCCGATGAATCCAATTCTGATGTTTTCGAGTCCAATCCAACTGAAGTGGCACCCAGTTTGGAGTAA
AA sequence
>Lus10034345 pacid=23175884 polypeptide=Lus10034345 locus=Lus10034345.g ID=Lus10034345.BGIv1.0 annot-version=v1.0
MALFVANGNGGTGATTLSAATNSAASIHCHQYASSFPRLPLPLSPKRAHLQIVSARNNRRSSTKTTEKRDKIDEAELENSMGSSAGLNGSSSVGVVDDGF
VMPKLPGQEKDFWEGPQWNTLGFVVEYLWGFGIIFALVACGVAVSSYNEGATDFKDTEAYKESTQAGGQVLEEADESNSDVFESNPTEVAPSLE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G73885 unknown protein Lus10034345
[exp]
0 1
AT1G73885 unknown protein Lus10005112
[exp]
1.0 0.9734
AT5G08410 FTRA2 ferredoxin/thioredoxin reducta... Lus10013448
[exp]
1.7 0.9714
AT3G23700 Nucleic acid-binding proteins ... Lus10022587
[exp]
2.2 0.9680
AT1G44575 CP22, PSBS, NPQ... PHOTOSYSTEM II SUBUNIT S, NONP... Lus10018163
[exp]
2.6 0.9626
AT4G03280 PGR1, PETC PROTON GRADIENT REGULATION 1, ... Lus10018521
[exp]
3.2 0.9729
AT2G40100 LHCB4.3 light harvesting complex photo... Lus10028299
[exp]
4.2 0.9656
AT5G66190 ATLFNR1 ferredoxin-NADP\(+\)-oxidoredu... Lus10041904
[exp]
4.5 0.9692
AT1G65230 Uncharacterized conserved prot... Lus10027002
[exp]
5.5 0.9507
AT1G32060 PRK phosphoribulokinase (.1) Lus10000674
[exp]
5.7 0.9626
AT1G51100 unknown protein Lus10040511
[exp]
6.5 0.9518

Lus10034345 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.