Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18290 1436 / 0 BTS, EMB2454 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) AT1G18910 470 / 1e-144 zinc ion binding;zinc ion binding (.1) AT1G74770 461 / 3e-141 zinc ion binding (.1) AT3G62970 201 / 7e-58 zinc finger (C3HC4-type RING finger) family protein (.1) AT5G18650 181 / 4e-51 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) AT5G25560 181 / 1e-50 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1.2.3.4) AT5G22920 179 / 6e-50 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) AT3G10815 45 / 0.0002 RING/U-box superfamily protein (.1) AT2G40830 45 / 0.0002 RHC1A RING-H2 finger C1A (.1.2.3) AT1G26800 43 / 0.0007 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005111 [exp] 2315 / 0 AT3G18290 1592 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Lus10042190 [exp] 493 / 1e-160 AT1G18910 563 / 0.0 zinc ion binding;zinc ion binding (.1) Lus10008628 [exp] 402 / 3e-119 AT1G74770 1024 / 0.0 zinc ion binding (.1) Lus10042188 [exp] 214 / 9e-64 AT1G74770 253 / 2e-78 zinc ion binding (.1) Lus10012811 [exp] 191 / 6e-54 AT5G18650 465 / 1e-167 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) Lus10008627 [exp] 197 / 4e-53 AT2G02800 475 / 6e-164 protein kinase 2B (.1.2) Lus10033969 [exp] 173 / 3e-48 AT5G18650 449 / 2e-161 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) Lus10042189 [exp] 178 / 5e-45 AT1G18910 583 / 0.0 zinc ion binding;zinc ion binding (.1) Lus10023914 [exp] 113 / 9e-27 AT5G22920 225 / 8e-72 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G123300 [exp] 1800 / 0 AT3G18290 1604 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Potri.010G122200 [exp] 1794 / 0 AT3G18290 1578 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Potri.012G055100 [exp] 1501 / 0 AT3G18290 1641 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Potri.015G066600 [exp] 618 / 0 AT1G74770 1199 / 0.0 zinc ion binding (.1) Potri.014G134400 [exp] 190 / 6e-54 AT3G62970 393 / 3e-139 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.009G005700 [exp] 183 / 3e-51 AT5G22920 437 / 8e-156 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) Potri.008G205400 [exp] 182 / 3e-51 AT5G18650 466 / 2e-168 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) Potri.006G245400 [exp] 179 / 5e-50 AT5G25560 475 / 7e-171 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1.2.3.4) Potri.006G121801 [exp] 162 / 3e-44 AT5G22920 398 / 6e-141 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) Potri.002G085800 [exp] 45 / 0.0003 AT1G60360 233 / 4e-74 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01814 [flax] [poplar] Hemerythrin Hemerythrin HHE cation binding domain PF05495 [flax] [poplar] zf-CHY CHY zinc finger
Representative CDS sequence Show only first row Show all	>Lus10034346 pacid=23176089 polypeptide=Lus10034346 locus=Lus10034346.g ID=Lus10034346.BGIv1.0 annot-version=v1.0 ATGGCGACGCCGTTTTCCGCTGTCGACGGAGGCGCCGGTGGAGTGGCGGTAATGGCAGGTCCACTCAACGCAATCGATCCTTCCACGCCTTCCAAGTCTT GCCTCAAGAATTCCGTACTCAAGTCACCAATACTCATATTTCTCTTCTTCCACAAAGCTATCCGCTCCGAGCTGGACGGCCTCCACCGCGCCGCCGTTGA TTTCGCCACCACTGGCGGAGATATTAAACCCTTGCTCCTCAAGTATCACTTCCTCCGTCGGATATATAAGCACCACTGCAATGCTGAGGATGAGGGTTAC TGTCTTACTGTAACTGTGAATCCAGGACTCGTCTTCTTATCTAAGGCATTCAAATCCTTTCTCTGGCTTCAGTTCTTTCTTATTTCGCTTTCCAGATTCA TCCCTCTGCGTGGTTTCCCCCTCTCTTGGGATTTCGCTGCTGACTGTTTTCTGGTTTTGAGCTCTCTGGTCATCTTTCCAGCTCTTGACATACGCGTGAA GAATGTAGCTCGAACTTACTCCCTTGAACATGAGGGAGAAAGTGTCTTCCCACTGCTCATTGAGAAGTTTTCATTTGAAGAGCAGGCTTCCCTGGTTTGG CAGTTTCTATGCAGCATTCCTATAAATATGATGGCTGAGTTTCTGCCATGGCTTTCTTCCTCAGTTTCATCCGACGATCACCAAGATATGCGTAAGTGCT TGTCCAAGATAATACCCAACAAGAAGCTCCTTCAGCAGGTGATATTTACCTGGATGGAGGGGACAGAACCATCTGATGCCTGTAAGACTTGTGAAGGTGG TTCACATTCAACGACAGTTTCAGAGGGAAAATCATTCTGTAAGAGAGAAATGCATTGTGCATGTGAATCATCCGGAAATGGTAAAAGGAAATATATGGAG CTAAGCTCCGATCTTGTTAATTCAACCATGCTTCATCCTGTTGACGAAATCTTGCTGTGGCATAATGCAATCAAGAGAGAGTTGGCTGACATAAGTGAGG CAGCTAAGAAGGTACAACTGTCTGGAGACTTTTCCGATCTCTCAGCCTTCAACAAGAGACTGCAATTCATTGCAGAAGTTTGCATCTTTCACAGTATTGC TGAGGATAAGGTTATATTCCCTGCAGTGGATTCTGAACTATCTTTTGCTCAGGAGCATGCCGAAGAAGAGATTCAGTTTGACAAACTTAGATGCCTCATT GAAAGCATTCAAAATGCTCGGGCCAACATATCACTCACTGAGTTTTATGGAAAGCTCTGCGCACAAGCTGATCAAATCATGGACAGCATACAAAAGCATT TTAGAAACGAGGAGATTCAGGTTCTACCACTTGCCCGAAAGCATTTTAGTGCAAAAAGACAGCGTGAGCTTCTATACCAGAGCTTATGCGTGATGCCTCT CAAATTAGTTGAATGTGTTCTACCATGGTTGGTAGCATCAATCACTGAACAGGAAGCAAGATTATTTCTCCAAAATATTTATCTAGCAGCACCAGCATCG GATTCTGCATTGGTTACCCTGTTTGCTGGTTGGGCATGCAAAGGTCGTTCTGGAAGTGCTTGCTTGTCCTCAAGTCCCCTTAATGGCTGCCCTGCGAAAA GCACAACGAATGATCTTAAACAGTTTGGCTGCGCTTGCATCCCTGTTTCATGTCCTAATGGGAAGTCATTTATTGATGGCCAAAAAGAGATATCAAACTG TGGAAGGCCAGTCAAGAGGCCAAACTCTGTTGCACACGAAGAGAATGGTTCTTGTCATTCTTCTGGGTCTGGCCGCCTTCACCAATCATCTGCTAACAAT GCTTCGTGCTGTGTACCAGCACTGGGAGTAAATAGCAGTAGTCTAGGAATTGGTTCTCTTGCAGCAGCAAAATCTCTACGATCTTTAGCTGTTAGTCCTT CTGCTCCATCTCTTAATTCTAGTCTCTTTAACTGGGAAATAGATGTGAGTCCCACTGATACTTGTTGTGGATCACGCCCTATAGATAACATATTCCAATT TCACAAAGCCATCCGTAAGGACTTGGAGTATTTGGACGTTGAATCCGGAAAGCTATGTGAACGCAGTGAAACTTTGCTTAGGCAGTTCACTGGTAGGTTT CGCTTGCTATGGGGGTTATATAGAGCACATAGCAATGCCGAGGATGATATAGTGTTTCCGGCATTGGAAGCTAAAGAGACACTTCATAATGTTAGCCATT CCTATACACTGGATCATAAGCAGGAGGAGAAACTCTTTGAAGACATCTCAACTACGTTATCTGATCTTACACAACTCCATGAATCCTGGAAGAGGAGCAG ACTTTGTGTTGATTTATCAGGAGATCTCAGTGGTGCTAATGACTCTGATGAGGTTGTTAGAAGGTACAATGAGCTTGCAACAAAGCTTCAGGGCATGTGC AAATCCATAAGAGTAACACTGGATCAACATGTTTTCCGGGAAGAACTAGAATTGTGGCCATTGTTTGACAGACACTTCTCGGTCGAGGAACAGGACAAAA TTGTAGGTCGAATTATTGGTACTACAGGGGCAGAGGTGCTCCAGTCGATGTTGCCATGGGTAACATCTGCTCTTACTCAGGAAGAGCAGAATAAGATGAT GGATACCTGGAAGCAGGCAACCAAAAATACTATGTTCAGTGAGTGGCTAAATGAATGGTGGGAAGGAAACTCTAAGGATACTCATATAGGAACAGCAGAA AGCTGCCTATCCCAGGGTGCTGATATTCATGAAAGTCTGGATTACAGTGATCAAAAGTTTAAGCCTGGGTGGAAAGATATTTTTCGGATGAATCAGAATG AGCTTGAAGCAGAAATACGGAAGGTTTCTCGAGATTCCACTCTTGATCCTAGAAGAAAAGCCTACCTGATTCAAAATCTTATGACCAGTCGGTGGATAGC TGCTCAGCAAAAGTCAATTCAATCTAGGACTGGGGAATCTTCGAATAGTGAAAAATTGGAGTGCTCTCCTTCATTTCGCGATCAGGATAAGAAAGTTTTT GGATGCGAGCATTACAAACGGAATTGTAAGCTTCGGGCAGCATGCTGTGGCAAGTTGTTTACATGCCGATTTTGTCATGATAAAGTCAGCGACCATTCAA TGGACAGGAAGGCTACAACTGAGATGATGTGTATGCAATGCCTGAAAATTCAACCTGCTGGACCTGTTTGTGCAACACCTTCCTGTGGTGGGTTGTCAAT GGCAAAGTATTATTGCAACATTTGTAAATTCTTCGATGATGAAAGAAACGTTTATCACTGTCCCTTCTGCAATCTATGCCGTGTTGGGAAGGGTCTGGGT ATTGATTTCTTCCATTGTATGAAGTGCAATTACTGCCTTACAATAAAGTTGGTTGACCATAAATGCCGAGAGAAGGGCCTGGAAACAAATTGCCCCATTT GTTGTGATGATTTGTTCACATCAAGTGCAACTGTCAGAGGCCTTCCATGCGGCCATTTCATGCATTCGAGCTGCTTTCAGGCGTATACAAACAGTCACTA TGTATGCCCAATTTGCAGCAAGTCAATGGGAGATATGTCTGTCTACTTTGGGATGCTCGATGCACTGCTGGCTTCTGAGCAGCTACCGGAAGAATACAGG GATCACTGTCAGGATATACTATGCAATGATTGCGACAAGAAGGGAAGTGCGCCGTTCCATTGGCTGTACCACAAGTGCAGGTCCTGTGGTTCCTACAACA CCAGGGTCATCAAGACTGATTCCAACTGCCCTACTCCAAATCAACCCCACACTGAGTGA
AA sequence Show only first row Show all	>Lus10034346 pacid=23176089 polypeptide=Lus10034346 locus=Lus10034346.g ID=Lus10034346.BGIv1.0 annot-version=v1.0 MATPFSAVDGGAGGVAVMAGPLNAIDPSTPSKSCLKNSVLKSPILIFLFFHKAIRSELDGLHRAAVDFATTGGDIKPLLLKYHFLRRIYKHHCNAEDEGY CLTVTVNPGLVFLSKAFKSFLWLQFFLISLSRFIPLRGFPLSWDFAADCFLVLSSLVIFPALDIRVKNVARTYSLEHEGESVFPLLIEKFSFEEQASLVW QFLCSIPINMMAEFLPWLSSSVSSDDHQDMRKCLSKIIPNKKLLQQVIFTWMEGTEPSDACKTCEGGSHSTTVSEGKSFCKREMHCACESSGNGKRKYME LSSDLVNSTMLHPVDEILLWHNAIKRELADISEAAKKVQLSGDFSDLSAFNKRLQFIAEVCIFHSIAEDKVIFPAVDSELSFAQEHAEEEIQFDKLRCLI ESIQNARANISLTEFYGKLCAQADQIMDSIQKHFRNEEIQVLPLARKHFSAKRQRELLYQSLCVMPLKLVECVLPWLVASITEQEARLFLQNIYLAAPAS DSALVTLFAGWACKGRSGSACLSSSPLNGCPAKSTTNDLKQFGCACIPVSCPNGKSFIDGQKEISNCGRPVKRPNSVAHEENGSCHSSGSGRLHQSSANN ASCCVPALGVNSSSLGIGSLAAAKSLRSLAVSPSAPSLNSSLFNWEIDVSPTDTCCGSRPIDNIFQFHKAIRKDLEYLDVESGKLCERSETLLRQFTGRF RLLWGLYRAHSNAEDDIVFPALEAKETLHNVSHSYTLDHKQEEKLFEDISTTLSDLTQLHESWKRSRLCVDLSGDLSGANDSDEVVRRYNELATKLQGMC KSIRVTLDQHVFREELELWPLFDRHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQEEQNKMMDTWKQATKNTMFSEWLNEWWEGNSKDTHIGTAE SCLSQGADIHESLDYSDQKFKPGWKDIFRMNQNELEAEIRKVSRDSTLDPRRKAYLIQNLMTSRWIAAQQKSIQSRTGESSNSEKLECSPSFRDQDKKVF GCEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMQCLKIQPAGPVCATPSCGGLSMAKYYCNICKFFDDERNVYHCPFCNLCRVGKGLG IDFFHCMKCNYCLTIKLVDHKCREKGLETNCPICCDDLFTSSATVRGLPCGHFMHSSCFQAYTNSHYVCPICSKSMGDMSVYFGMLDALLASEQLPEEYR DHCQDILCNDCDKKGSAPFHWLYHKCRSCGSYNTRVIKTDSNCPTPNQPHTE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18290		BTS, EMB2454	embryo defective 2454, BRUTUS,...		Lus10034346 [exp]	0	1
AT3G42860			zinc knuckle (CCHC-type) famil...		Lus10012985 [exp]	1.0	0.9394
AT5G15270			RNA-binding KH domain-containi...		Lus10033557 [exp]	3.6	0.9073
ATMG00510		ATMG00510.1, NA...	NADH dehydrogenase subunit 7 (...		Lus10009720 [exp]	7.9	0.9369
ATMG00510		ATMG00510.1, NA...	NADH dehydrogenase subunit 7 (...		Lus10000459 [exp]	9.6	0.9361
AT3G54440			glycoside hydrolase family 2 p...		Lus10039520 [exp]	9.9	0.9184
ATMG00650		ATMG00650.1, NA...	NADH dehydrogenase subunit 4L ...		Lus10004838 [exp]	12.8	0.9302
AT2G42920			Pentatricopeptide repeat (PPR-...		Lus10007341 [exp]	13.3	0.8890
AT2G27810		ATNAT12	ARABIDOPSIS NUCLEOBASE-ASCORBA...		Lus10009402 [exp]	14.3	0.8879
ATCG00020		ATCG00020.1, PS...	photosystem II reaction center...		Lus10004895 [exp]	14.7	0.9082
AT2G40090		ATATH9	ABC2 homolog 9 (.1)		Lus10028292 [exp]	14.9	0.8371

Compare expression of checked genes

Lus10034346 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.