Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25970 85 / 5e-20 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT4G31350 72 / 2e-15 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT5G16170 70 / 1e-14 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G68380 67 / 1e-13 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT4G30060 66 / 2e-13 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G10280 66 / 2e-13 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G57270 66 / 2e-13 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2.3) AT5G11730 64 / 1e-12 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT4G25870 63 / 2e-12 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT2G19160 63 / 3e-12 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005108 [exp] 105 / 7e-28 AT1G10880 330 / 4e-109 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10034349 [exp] 87 / 1e-20 AT1G68390 387 / 3e-131 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10035828 [exp] 85 / 5e-20 AT1G68390 401 / 7e-138 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10036610 [exp] 84 / 1e-19 AT1G68390 404 / 3e-139 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10005107 [exp] 73 / 6e-16 AT1G68390 241 / 4e-89 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10031958 [exp] 70 / 1e-14 AT1G68390 403 / 2e-138 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10013427 [exp] 70 / 1e-14 AT1G10280 528 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10035145 [exp] 70 / 1e-14 AT1G68390 393 / 6e-137 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10040972 [exp] 69 / 3e-14 AT1G10280 529 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G233400 [exp] 92 / 1e-22 AT5G11730 557 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.015G045400 [exp] 89 / 2e-21 AT1G68390 390 / 2e-134 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.018G059100 [exp] 88 / 2e-21 AT5G11730 548 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G097700 [exp] 81 / 9e-19 AT5G16170 452 / 6e-159 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.010G121900 [exp] 75 / 1e-16 AT5G11730 409 / 1e-141 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.015G045500 [exp] 73 / 9e-16 AT5G16170 394 / 2e-135 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.018G143900 [exp] 71 / 7e-15 AT2G19160 564 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.008G123500 [exp] 70 / 8e-15 AT1G68380 254 / 1e-82 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.010G121800 [exp] 69 / 3e-14 AT1G68390 399 / 1e-137 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.003G001700 [exp] 68 / 5e-14 AT1G10280 543 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF02485 [flax] [poplar] Branch Core-2/I-Branching enzyme
Representative CDS sequence Show only first row Show all	>Lus10034348 pacid=23175839 polypeptide=Lus10034348 locus=Lus10034348.g ID=Lus10034348.BGIv1.0 annot-version=v1.0 ATGGTCGATGCCGAAAGGAGGCTATTCGCTAACGCGCTCCTCGACTTCTCCAACCAACGGTTCATCCTCCTTTCCGAGTCTTGCATCCTTCTATTCGATT TCACCACCATCTACAACTACCTAGTTTTCAATTTCTCCAACACGAGCTTCTTGGCTCGATTGATGATCCTCGACCCATGGCCCGAGGCAGATACAACAAA CTCATGCAGCCAATCATCATGCTATCAGACTGGCGCAAAGGTGGGTCACATCCTACCATGGTTTTTGAGGAAGGATGTGAGCCAAGGGTTCTTGATGAGG ATCAGAAACATGTCCGACTGTGATTATAGTGATCAAAACCATGGAACAATTTGTTTCCTCTTTGCTAGGAAGTTTCACCCTAGTTCTTTGGAGCCTTTGT TGAGGATAGTTCCATCTTTGTTGGTTTTCAGCACTTAA
AA sequence Show only first row Show all	>Lus10034348 pacid=23175839 polypeptide=Lus10034348 locus=Lus10034348.g ID=Lus10034348.BGIv1.0 annot-version=v1.0 MVDAERRLFANALLDFSNQRFILLSESCILLFDFTTIYNYLVFNFSNTSFLARLMILDPWPEADTTNSCSQSSCYQTGAKVGHILPWFLRKDVSQGFLMR IRNMSDCDYSDQNHGTICFLFARKFHPSSLEPLLRIVPSLLVFST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11730			Core-2/I-branching beta-1,6-N-...		Lus10034348 [exp]	0	1
AT1G65450			HXXXD-type acyl-transferase fa...		Lus10029920 [exp]	1.0	1.0000
AT5G37060		ATCHX24	cation/H+ exchanger 24, ARABID...		Lus10031852 [exp]	2.0	0.9902
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10011999 [exp]	2.4	0.9854
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10007909 [exp]	2.8	0.9826
					Lus10034069 [exp]	3.0	0.9647
					Lus10011637 [exp]	3.2	0.9807
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10029377 [exp]	3.5	0.9779
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10008682 [exp]	3.7	0.9739
AT1G52190			Major facilitator superfamily ...		Lus10008539 [exp]	4.0	0.9691
AT4G00350			MATE efflux family protein (.1...		Lus10036374 [exp]	4.7	0.9581

Compare expression of checked genes

Lus10034348 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.